DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42319 and Lnx2

DIOPT Version :9

Sequence 1:NP_001137648.1 Gene:CG42319 / 36473 FlyBaseID:FBgn0259219 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_542985.4 Gene:Lnx2 / 140887 MGIID:2155959 Length:687 Species:Mus musculus


Alignment Length:113 Identity:29/113 - (25%)
Similarity:50/113 - (44%) Gaps:19/113 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 GFLITGG---AEFHMPLTVFQVTPNG-LADKAGIRLGDIILEINEEDASQLTLSQAHEKINSTPK 112
            |..:.||   ....:|:.|..|.|:| ||....|:.||::|.||..|.:.|:.|:|...:.::..
Mouse   477 GMTVAGGRGSKSGELPIFVTSVPPHGCLARDGRIKRGDVLLNINGIDLTNLSHSEAVAMLKASAA 541

  Fly   113 KIHFLLRNME-----------EDDPM----GQFEAGEEKSIVMRVPKP 145
            ....:|:.:|           |:.|.    .:::|....|.||.:..|
Mouse   542 SPAVILKALEVQIAEEAAQATEEQPSAFSENEYDASWSPSWVMWLGLP 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42319NP_001137648.1 PDZ_signaling 45..119 CDD:238492 20/70 (29%)
Lnx2NP_542985.4 mRING-HC-C3HC3D_LNX2 46..90 CDD:319694
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 145..175
NPXY motif 207..210
PDZ 229..315 CDD:214570
PDZ_signaling 336..418 CDD:238492
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 417..454
PDZ_signaling 463..539 CDD:238492 20/61 (33%)
PDZ_signaling 596..680 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.