DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42319 and pdlim2

DIOPT Version :10

Sequence 1:NP_001137648.1 Gene:CG42319 / 36473 FlyBaseID:FBgn0259219 Length:452 Species:Drosophila melanogaster
Sequence 2:XP_002932747.1 Gene:pdlim2 / 100488396 XenbaseID:XB-GENE-941744 Length:149 Species:Xenopus tropicalis


Alignment Length:94 Identity:20/94 - (21%)
Similarity:40/94 - (42%) Gaps:16/94 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 EDASQLTLSQAHEKINSTPKKIHF--LLRNMEEDDPMGQFEAGEEKSIVMR----VP-------- 143
            :|:....:.|.:.:..::|::.:.  ||:...|.:|.|.|....:.|..::    ||        
 Frog     6 QDSEVYKMLQGNLENRTSPRQSNSFKLLQEAMESNPDGGFSMPSKFSPTIQKQNSVPNNQSPVAQ 70

  Fly   144 -KPLPPPSGRIR-ASSIEMRLLEMQRKLS 170
             :|...||..:| .....|.:.|:..|:|
 Frog    71 NRPTNSPSAALRTCEKCSMTISEVAVKIS 99

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42319NP_001137648.1 PDZ_ZASP52-like 41..120 CDD:467281 5/28 (18%)
pdlim2XP_002932747.1 DUF4749 <6..39 CDD:464948 5/32 (16%)
LIM 84..136 CDD:413332 4/16 (25%)

Return to query results.
Submit another query.