DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4679 and AT1G06710

DIOPT Version :9

Sequence 1:NP_610854.1 Gene:CG4679 / 36466 FlyBaseID:FBgn0033816 Length:652 Species:Drosophila melanogaster
Sequence 2:NP_001321172.1 Gene:AT1G06710 / 837181 AraportID:AT1G06710 Length:997 Species:Arabidopsis thaliana


Alignment Length:805 Identity:150/805 - (18%)
Similarity:252/805 - (31%) Gaps:308/805 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 LLQAL--------ASTVARDYTAPHYKYHDDPFLIPMSNAAKRTYAMSKESGRKAAKWIKEEHRE 106
            |:||.        ||.:.|:.:..:.:         |.....|.:|.|.   .|..||     ||
plant   241 LIQAFLKADRLDSASLIHREMSLANLR---------MDGFTLRCFAYSL---CKVGKW-----RE 288

  Fly   107 LFMHQEAQPAIEKFAPSMV-YT-------EDSVVDE---------------------TSLAQLIS 142
            .....|.    |.|.|..| ||       |.|:.:|                     |.|...::
plant   289 ALTLVET----ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 349

  Fly   143 QGELKDAVLVYNLLEQKGNPISPELKQSLLELVCF---HNNQEPIPEEYIE----ERWFLQNNKR 200
            :.:|.....|.|::..:|...||::..||:...|.   |:....:.::.::    ..:.:.|...
plant   350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 414

  Fly   201 RERSGKTWKDG------DLAEKLYSE-------IEPKTPQSYASLIRGMAKYLQCERAYALLQEA 252
            ....|.  ||.      |||||.|||       :......|:...:....||   |:|:::::|.
plant   415 GSICGD--KDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY---EKAFSVIREM 474

  Fly   253 GEKQVQLDTNTFNSVIEI--------VSFLKDTAEQRWQLCKDL--------------------- 288
            ..:....||:|::.|:..        ::||.....:|..|..|:                     
plant   475 IGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARK 539

  Fly   289 -LNEMSQQKLRPNLGTLNAVLQC-------------------------ISTF-----GNFKVA-- 320
             .|||.:....||:.|..|::..                         |.|:     |:.|..  
plant   540 WFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQV 604

  Fly   321 --------RAAALQALPE----FKQLGVN---PSLGSYYYLLIIFCR----------------ER 354
                    |....:.:|:    |||...|   |::.:|..||..||:                |.
plant   605 EKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG 669

  Fly   355 GPVSHVIVDILND---ISGKEFQIQH----------PKDTYFFATAMD----VCRNHLHDKSLAK 402
            ...:.::.|.|.|   ..||..:.|.          |...|.:::.:|    |.|..|..|.|:|
plant   670 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 734

  Fly   403 KVDELLHTGKNYDLVGDSFKESIYYRNYLALLCQTESTEDFMLSYDLL--------VPNIYIPEP 459
            .::            .......:.|...:..||:...|::   :|.|:        .||:.....
plant   735 MLE------------NSCAPNVVIYTEMIDGLCKVGKTDE---AYKLMQMMEEKGCQPNVVTYTA 784

  Fly   460 --------GIMEEILRAIEINGAVEYVPRLWSDMVVFDH-----------------------THR 493
                    |.:|..|..:|..|:....|...:..|:.||                       ||.
plant   785 MIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHT 849

  Fly   494 ---------------ESL-------------LLYVLRILVDNKPNPDSPAQAQLPEQGAKVALDM 530
                           |||             .|.|.|:|:||                    |..
plant   850 AGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDN--------------------LIK 894

  Fly   531 FERVEEAIKRLRKVSFTGQMLGD-------ILTLLVRGGSYEKATEVFAHIDKNQHRIPGT-PSL 587
            .:|:|.|::.|.:|:.....|.|       ::..|......|.|.::|:.:.|.     |. |.:
plant   895 AQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKK-----GVIPEM 954

  Fly   588 NALIEFVDASVQEKSPSQALFALQY 612
            .:....:....:....|:||..|.:
plant   955 QSFCSLIKGLFRNSKISEALLLLDF 979

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4679NP_610854.1 PLN03218 <210..>348 CDD:215636 44/227 (19%)
PPR repeat 228..255 CDD:276811 6/26 (23%)
PPR repeat 261..295 CDD:276811 11/63 (17%)
AT1G06710NP_001321172.1 PPR repeat 167..194 CDD:276811
PLN03218 <204..>608 CDD:215636 75/392 (19%)
PPR repeat 204..229 CDD:276811
PPR repeat 235..261 CDD:276811 6/19 (32%)
PPR repeat 304..331 CDD:276811 5/26 (19%)
PPR repeat 337..366 CDD:276811 5/28 (18%)
PPR repeat 372..400 CDD:276811 5/27 (19%)
PPR repeat 485..512 CDD:276811 4/26 (15%)
PLN03218 <520..>911 CDD:215636 73/425 (17%)
PPR repeat 520..547 CDD:276811 3/26 (12%)
PPR repeat 553..582 CDD:276811 2/28 (7%)
PPR repeat 588..614 CDD:276811 4/25 (16%)
PPR repeat 639..665 CDD:276811 5/25 (20%)
PPR repeat 674..702 CDD:276811 6/27 (22%)
PPR repeat 711..738 CDD:276811 7/38 (18%)
PPR repeat 746..773 CDD:276811 6/29 (21%)
PPR repeat 779..808 CDD:276811 5/28 (18%)
PPR repeat 814..842 CDD:276811 3/27 (11%)
PPR repeat 884..909 CDD:276811 10/44 (23%)
PPR repeat 915..948 CDD:276811 6/32 (19%)
PPR_2 921..966 CDD:404055 7/49 (14%)
PPR repeat 954..978 CDD:276811 3/23 (13%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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