DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4679 and AT5G59900

DIOPT Version :9

Sequence 1:NP_610854.1 Gene:CG4679 / 36466 FlyBaseID:FBgn0033816 Length:652 Species:Drosophila melanogaster
Sequence 2:NP_200798.1 Gene:AT5G59900 / 836112 AraportID:AT5G59900 Length:907 Species:Arabidopsis thaliana


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4679NP_610854.1 PLN03218 <210..>348 CDD:215636
PPR repeat 228..255 CDD:276811
PPR repeat 261..295 CDD:276811
AT5G59900NP_200798.1 PPR repeat 106..133 CDD:276811
PPR repeat 159..185 CDD:276811
PPR_2 190..238 CDD:404055
PPR repeat 194..221 CDD:276811
PLN03218 <220..>589 CDD:215636
PPR repeat 227..256 CDD:276811
PPR repeat 262..288 CDD:276811
PPR repeat 299..326 CDD:276811
PPR repeat 336..361 CDD:276811
PPR repeat 369..396 CDD:276811
PPR repeat 404..431 CDD:276811
PLN03218 <440..>835 CDD:215636
PPR repeat 440..466 CDD:276811
PPR repeat 474..501 CDD:276811
PPR repeat 507..536 CDD:276811
PPR repeat 542..571 CDD:276811
PPR repeat 577..601 CDD:276811
PPR repeat 612..641 CDD:276811
PPR repeat 649..676 CDD:276811
PPR repeat 682..711 CDD:276811
PPR repeat 717..744 CDD:276811
PPR repeat 789..816 CDD:276811
PPR_2 820..868 CDD:404055
PPR repeat 822..851 CDD:276811
PPR_2 855..>894 CDD:404055
PPR repeat 857..885 CDD:276811
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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