DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4679 and SVR7

DIOPT Version :9

Sequence 1:NP_610854.1 Gene:CG4679 / 36466 FlyBaseID:FBgn0033816 Length:652 Species:Drosophila melanogaster
Sequence 2:NP_193372.6 Gene:SVR7 / 827333 AraportID:AT4G16390 Length:702 Species:Arabidopsis thaliana


Alignment Length:734 Identity:142/734 - (19%)
Similarity:243/734 - (33%) Gaps:206/734 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 CSLSSSGAH-----------YTTAAPAEDAPIEIPNRIERSPTDLLQALASTVARDY-TAPHYKY 69
            ||..||..|           |..:.|........||.......:||||...:|.... .:...|.
plant     7 CSSPSSLLHDPLPLCNLLSVYPKSTPRSFLSSYNPNSSHFHSRNLLQATHVSVQEAIPQSEKSKL 71

  Fly    70 HDDPFLIPMSNAAKRTYAMSKESGRKAAKWIKEEHRELFMHQEAQPAIEKFAPSM---------- 124
            .|....||...|:| :|........:|::..::.:...:      .::.|.|.|:          
plant    72 VDVDLPIPEPTASK-SYVWVNPKSPRASQLRRKSYDSRY------SSLIKLAESLDACKPNEADV 129

  Fly   125 ----------VYTEDSVV-------DETS---LAQLISQGELKDAVLVYNLL-----EQKGNPIS 164
                      ::.:|:||       .||:   |..|:...:....|::||:.     :.|....|
plant   130 CDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKS 194

  Fly   165 PELKQSLLE-------------LVCFHNNQEPIPEEYIEERWFLQNNKRRERSGKTWKDGDLAEK 216
            .:|...:||             :.|...|  .:|:..:|  ||                    ||
plant   195 EKLFDEMLERGIKPDNATFTTIISCARQN--GVPKRAVE--WF--------------------EK 235

  Fly   217 LYS-EIEPKTPQSYASLIRGMAKYLQCERAYALLQEAGEKQVQLDTNTFNSVIEIVSFLKDTAEQ 280
            :.| ..||.. .:.|::|....:....:.|.:|...|..::.::|..||:::|.|..     ...
plant   236 MSSFGCEPDN-VTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYG-----VSG 294

  Fly   281 RWQLCKDLLNEMSQQKLRPNLGTLNAVLQCISTFGNFKVARAAALQALPEFKQL---GVNPSLGS 342
            .:..|.::..||....::|||...|   :.|.:.|..|    ...||...:|.|   |..|:..:
plant   295 NYDGCLNIYEEMKALGVKPNLVIYN---RLIDSMGRAK----RPWQAKIIYKDLITNGFTPNWST 352

  Fly   343 YYYLLIIFCRERGPVSHVIVDILNDISGKEFQIQHPKDTYFFATAMDVCRNHLHDKSLAKKVDEL 407
            |..|:..:.|.|  .....:.|..::..|...:    ....:.|.:.:|.    |.....:..|:
plant   353 YAALVRAYGRAR--YGDDALAIYREMKEKGLSL----TVILYNTLLSMCA----DNRYVDEAFEI 407

  Fly   408 LHTGKNYDLVG-DSFKESIYYRNY----------LALLCQTESTEDFMLSYDLLVPNIYIPEPGI 461
            ....||.:... ||:..|.....|          .|||...|:..:         |.:::     
plant   408 FQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFE---------PTLFV----- 458

  Fly   462 MEEILRAIEINGAVEYVPRLWSDMV-VFDHTHRESLLLYVLRILVDNKPNPDS-------PAQAQ 518
               :...|:..|..:.|    .|:| .||.         ||.:.:    .||.       ....|
plant   459 ---LTSVIQCYGKAKQV----DDVVRTFDQ---------VLELGI----TPDDRFCGCLLNVMTQ 503

  Fly   519 LPEQGAKVALDMFERVEEAIKRLRKVSFTGQMLGDILTLLV-----RGGSYEK-ATEVFAHIDKN 577
            .|.             ||..|.:..|......||.::.:||     ..|.::| |:|:...|..:
plant   504 TPS-------------EEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSD 555

  Fly   578 QHRIPGTPSLNALIEF-VDASVQEKSPSQALFALQYAVENNFDSRELA------KRIHEGFTLNE 635
            ..:    ..||.||:. |:.:..|::.......|:|.:.....|:...      |.:..|..|..
plant   556 VKK----AYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTA 616

  Fly   636 TH-----LSKLKSLVGESF 649
            .|     ||:.....||.|
plant   617 LHVWMNDLSEAALESGEEF 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4679NP_610854.1 PLN03218 <210..>348 CDD:215636 33/141 (23%)
PPR repeat 228..255 CDD:276811 5/26 (19%)
PPR repeat 261..295 CDD:276811 7/33 (21%)
SVR7NP_193372.6 PPR_2 175..219 CDD:289786 8/43 (19%)
PPR 176..209 CDD:273253 7/32 (22%)
PPR repeat 177..204 CDD:276811 6/26 (23%)
PPR_2 208..257 CDD:289786 13/73 (18%)
PPR repeat 210..239 CDD:276811 8/52 (15%)
PPR 212..244 CDD:273253 10/55 (18%)
PPR_1 240..270 CDD:289614 6/30 (20%)
PPR repeat 245..270 CDD:276811 4/25 (16%)
PPR_2 279..327 CDD:289786 13/55 (24%)
PPR 281..314 CDD:273253 7/37 (19%)
PPR repeat 282..309 CDD:276811 7/31 (23%)
PPR_2 313..362 CDD:289786 15/55 (27%)
PPR repeat 315..344 CDD:276811 9/35 (26%)
PPR repeat 350..379 CDD:276811 5/30 (17%)
PPR 352..385 CDD:273253 6/38 (16%)
PPR_1 379..412 CDD:289614 5/40 (13%)
PPR_2 384..432 CDD:289786 9/51 (18%)
PPR repeat 385..412 CDD:276811 4/30 (13%)
PPR_2 419..468 CDD:289786 10/65 (15%)
PPR repeat 421..449 CDD:276811 6/27 (22%)
PPR 423..455 CDD:273253 6/40 (15%)
PPR repeat 456..484 CDD:276811 8/48 (17%)
PPR 457..491 CDD:273253 10/58 (17%)
PPR repeat 551..582 CDD:276811 7/34 (21%)
SMR 600..672 CDD:214676 9/36 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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