DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4679 and AT3G61520

DIOPT Version :9

Sequence 1:NP_610854.1 Gene:CG4679 / 36466 FlyBaseID:FBgn0033816 Length:652 Species:Drosophila melanogaster
Sequence 2:NP_191711.1 Gene:AT3G61520 / 825325 AraportID:AT3G61520 Length:766 Species:Arabidopsis thaliana


Alignment Length:264 Identity:57/264 - (21%)
Similarity:104/264 - (39%) Gaps:51/264 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 DAVLVYNLLEQKGNPISPELKQSLLELVCFHNNQEPIPEEYIEERWFLQNNKRRERSGK-----T 207
            ||:.|...|::.|..:.......|:.|.|..||.|.:.|...:          .|:.||     |
plant   529 DAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTD----------MEKEGKKPDSIT 583

  Fly   208 W----------KDGDLAEKLYSE-----IEPKTPQSYASLIRGMAKYLQCERAYALLQEAG-EKQ 256
            :          ||.:..|::..:     ::| |..:|.::|.......:.:.|..|.::.| ..:
plant   584 YNTLISFFGKHKDFESVERMMEQMREDGLDP-TVTTYGAVIDAYCSVGELDEALKLFKDMGLHSK 647

  Fly   257 VQLDTNTFNSVIEIVSFLKDTAEQRWQLCKDLLNEMSQQKLRPNLGTLNAVLQCISTFGNFKVAR 321
            |..:|..:|.:|...|.|.:..:     ...|..||..:.:|||:.|.||:.:|:    |.|...
plant   648 VNPNTVIYNILINAFSKLGNFGQ-----ALSLKEEMKMKMVRPNVETYNALFKCL----NEKTQG 703

  Fly   322 AAALQALPEFKQLGVNPSLGSYYYLLIIFCRERGPVSHVIVDILNDISGKEFQIQHPKDTYFFAT 386
            ...|:.:.|..:....|:..:...|:     ||...|..:|.:...:.|  :.:..|.:.   |:
plant   704 ETLLKLMDEMVEQSCEPNQITMEILM-----ERLSGSDELVKLRKFMQG--YSVASPTEK---AS 758

  Fly   387 AMDV 390
            ..||
plant   759 PFDV 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4679NP_610854.1 PLN03218 <210..>348 CDD:215636 31/143 (22%)
PPR repeat 228..255 CDD:276811 5/27 (19%)
PPR repeat 261..295 CDD:276811 8/33 (24%)
AT3G61520NP_191711.1 TAF9 <117..160 CDD:304618
PPR repeat 152..185 CDD:276811
PPR repeat 189..214 CDD:276811
PPR <189..211 CDD:295754
PPR repeat 222..253 CDD:276811
PPR repeat 266..288 CDD:276811
PPR_2 297..341 CDD:289786
PPR repeat 297..323 CDD:276811
PPR_1 325..356 CDD:289614
PPR_2 327..382 CDD:289786
PPR repeat 331..358 CDD:276811
PPR_1 366..397 CDD:289614
PPR_2 369..418 CDD:289786
PPR repeat 370..400 CDD:276811
PPR_1 402..433 CDD:289614
PPR_2 404..453 CDD:289786
PPR repeat 406..435 CDD:276811
PPR 437..468 CDD:295754
PPR_2 439..487 CDD:289786
PPR repeat 441..470 CDD:276811
PPR_2 475..523 CDD:289786
PPR repeat 476..504 CDD:276811
PPR 477..511 CDD:273253
PPR_2 509..558 CDD:289786 7/28 (25%)
PPR repeat 511..540 CDD:276811 4/10 (40%)
PPR 548..581 CDD:273253 10/42 (24%)
PPR repeat 548..575 CDD:276811 8/36 (22%)
PPR_2 579..627 CDD:289786 8/48 (17%)
PPR repeat 581..610 CDD:276811 4/28 (14%)
PPR 582..616 CDD:273253 5/34 (15%)
PPR_1 610..642 CDD:289614 6/32 (19%)
PPR_2 614..664 CDD:289786 11/50 (22%)
PPR repeat 616..642 CDD:276811 4/25 (16%)
PPR_1 648..679 CDD:289614 8/35 (23%)
PPR_2 650..697 CDD:289786 14/51 (27%)
PPR repeat 652..681 CDD:276811 8/33 (24%)
PPR repeat 687..715 CDD:276811 8/31 (26%)
PPR repeat 722..746 CDD:276811 5/28 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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