DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4679 and Ptcd3

DIOPT Version :9

Sequence 1:NP_610854.1 Gene:CG4679 / 36466 FlyBaseID:FBgn0033816 Length:652 Species:Drosophila melanogaster
Sequence 2:NP_081551.2 Gene:Ptcd3 / 69956 MGIID:1917206 Length:685 Species:Mus musculus


Alignment Length:650 Identity:208/650 - (32%)
Similarity:335/650 - (51%) Gaps:63/650 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 IEIPNRIERSPTDLLQALASTVARDYTAPHYKYHDDPFLIPMSNAAKRTYAMSKESGRKAAKWIK 101
            |.||.:.......:||||||||.||.||..|.:||||:|||.|....|::.::|:||..|||:|.
Mouse    58 IVIPKKKTWDKVAVLQALASTVNRDPTAAPYVFHDDPYLIPTSALESRSFLLAKKSGETAAKFII 122

  Fly   102 EEHRELFMHQEAQPAI-----EKFAPSMVYTEDSVVDETSLAQLISQGELKDAVLVYNLLEQKGN 161
            ..:.:.|....|:|.|     |.|.|.:   ||  |.|.:|.:.|...:::.:|.:::.|.|.|.
Mouse   123 NSYPKYFQKDIAEPHIPCLMPEYFEPQI---ED--VSEAALEERIRLRKVRASVDMFDQLLQAGT 182

  Fly   162 PISPELKQSLLELVCFHNNQEPIPEEY----------IEERWFLQNNKRRERSGKTWKDGDLAEK 216
            .:|.|...|||:|:|::.:||| |.:|          :||. ..:||:..:.....||..:.||:
Mouse   183 TVSLETTNSLLDLLCYYGDQEP-PADYPFQQTEHLENLEEA-AEENNQTSKMESGPWKAQNNAER 245

  Fly   217 LYSEIEPKTPQSYASLIRGMAKYLQCERAYA----LLQEAGEKQVQLDTNTFNSVIEIVSF-LKD 276
            :::.:..|..:||.::||||.|:    ||||    :..|....::..|..|||::||..:| |.:
Mouse   246 IFALMPEKNARSYCTMIRGMVKH----RAYAQALNVYTELLNNRLSADVYTFNALIEAKTFILNE 306

  Fly   277 TAEQRWQLCKDLLNEMSQQKLRPNLGTLNAVL----QCISTFGNFKVARAAALQALPEFKQLGVN 337
            ..|::|....|||..|..||::|||.|.|.:|    :|      :.:.|..|||.|.|.|.:|:.
Mouse   307 KFEEKWNDILDLLKHMVAQKVKPNLQTFNTILKGLRKC------YSLGRIPALQILREMKHIGIE 365

  Fly   338 PSLGSYYYLLIIFC-RERGPV---SHVIVDILNDISGKEFQIQHPKDTYFFATAMDVCRNHLHDK 398
            |||.:|::::.:|. |:...:   |.:|.||:|::.|:.|..|...|..||..||.|| :.|.|.
Mouse   366 PSLATYHHIIHLFYPRDLSAIKMPSLIIYDIMNELEGRTFSPQDLDDGRFFQLAMSVC-SSLRDL 429

  Fly   399 SLAKKVDELLHTGKNYDLVGDSFKESIYYRNYLALLCQTESTEDFMLSYDLLVPNIYIPEPGIME 463
            .||.:|..||:||.|..|||......:||..:.:|:|..|..:..:..|..|:|::::|...|..
Mouse   430 ELAYQVHRLLNTGDNRKLVGHDPLRKVYYSKFFSLICSLEQIDVTLKWYKDLIPSVFLPHYQIFI 494

  Fly   464 EILRAIEINGAVEYVPRLWSDMVVFDHTHRESLLLYVLRILVDNKPNPDSPAQAQLPEQGAKVAL 528
            .:|:|:::...:|.||::|.|...:.||.|::|...||.::..:|..|      :|....|..|.
Mouse   495 GLLQALDVANRLELVPQIWKDSKEYSHTFRDALREEVLMLMARDKHPP------ELQVAFADCAA 553

  Fly   529 DMFERVEEAIKRLRKVSFTGQMLGDILTLLVRGGSYEKATEVFAHIDKNQHRIPGTPSLNALIEF 593
            |:....|:...|.....:....|..|..|.:|||..::|.::. .:.|...:||....|.   ||
Mouse   554 DIKSTYEDQSARQPAFDWPANPLQYIAVLFLRGGRSQEAWKML-ELFKKHKKIPRNELLE---EF 614

  Fly   594 VDASVQEKSPSQALFALQYAVENNFDSRE-LAKRIHEGFTLNET------HLSKLKSLVGESFLD 651
            :|.:....|.:.|:..::.|...:....| ||:|:...||::..      :|::|.|..|||..|
Mouse   615 MDTAKASGSTALAIEVVKLASAFSLPIGESLAQRVVMDFTVDPEQKEALGNLTELNSSDGESSSD 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4679NP_610854.1 PLN03218 <210..>348 CDD:215636 50/146 (34%)
PPR repeat 228..255 CDD:276811 12/30 (40%)
PPR repeat 261..295 CDD:276811 13/34 (38%)
Ptcd3NP_081551.2 PPR 1 150..184 10/38 (26%)
PPR 2 185..220 12/35 (34%)
PPR_2 253..299 CDD:289786 18/49 (37%)
PPR 3 254..288 12/37 (32%)
PPR repeat 257..284 CDD:276811 12/30 (40%)
PPR_2 289..343 CDD:289786 22/53 (42%)
PPR 4 289..329 16/39 (41%)
PPR repeat 290..325 CDD:276811 13/34 (38%)
PPR_2 329..371 CDD:289786 18/47 (38%)
PPR 5 330..366 14/41 (34%)
PPR repeat 331..360 CDD:276811 11/34 (32%)
PPR 6 367..407 12/39 (31%)
PPR 7 412..446 17/34 (50%)
PPR 8 454..488 8/33 (24%)
PPR 9 489..523 9/33 (27%)
PPR 10 572..606 8/34 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 663..685 6/16 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849279
Domainoid 1 1.000 118 1.000 Domainoid score I5845
eggNOG 1 0.900 - - E1_KOG4422
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41211
Inparanoid 1 1.050 287 1.000 Inparanoid score I2814
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46509
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005556
OrthoInspector 1 1.000 - - oto92135
orthoMCL 1 0.900 - - OOG6_106573
Panther 1 1.100 - - LDO PTHR16276
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4311
SonicParanoid 1 1.000 - - X4519
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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