DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4679 and ptcd3

DIOPT Version :9

Sequence 1:NP_610854.1 Gene:CG4679 / 36466 FlyBaseID:FBgn0033816 Length:652 Species:Drosophila melanogaster
Sequence 2:NP_001032449.1 Gene:ptcd3 / 553325 ZFINID:ZDB-GENE-030131-6849 Length:667 Species:Danio rerio


Alignment Length:648 Identity:204/648 - (31%)
Similarity:344/648 - (53%) Gaps:35/648 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 SGAHYTTAAPAEDAPIEIPNRIERSPTDLLQALASTVARDYTAPHYKYHDDPFLIPMSNAAKRTY 86
            |.|.|.....:....|.||.:...|...:||||||||.||.||..|:..||.||.|.:.:..:.:
Zfish    32 SFAAYQQPDVSSQEEIVIPKKKTWSKEAVLQALASTVKRDPTASDYRLQDDSFLTPKTASDFKLF 96

  Fly    87 AMSKESGRKAAKWIKEEHRELFMHQEAQPAIEKFAPSMVYTEDSVVDETSLAQLISQGELKDAVL 151
            ..|:||||.|||:...::.:.|....|||.|....|..:..:...|.|.:|.:.|...::|.||.
Zfish    97 CRSQESGRNAAKYFINKYPKYFEKDYAQPHIPCLMPETLDAQLEDVSEAALKERIQLRKVKAAVD 161

  Fly   152 VYNLLEQKGNPISPELKQSLLELVCFHNNQEPIPEEY-----IEERWFLQN--NKRRERSGK--- 206
            :|:.|.|.|..:|.:|...||:|:|.:...:|:.|.:     .||...:|:  ..::.||.|   
Zfish   162 LYDQLLQAGTSVSLDLTNDLLDLICLYGEADPVQETFEAEQRSEEMEDIQDETQTKKGRSPKASD 226

  Fly   207 ----TWKDGDLAEKLYSEIEPKTPQSYASLIRGMAKYLQCERAYALLQEAGEKQVQLDTNTFNSV 267
                :||:.:.||:::..:.....:||::|||||.|:....:|::...:....:::.|.:.||::
Zfish   227 LLKTSWKENNNAERIFGLLSEPNTRSYSALIRGMVKHAAYTQAFSTYTDLLNNRLKADVHIFNAL 291

  Fly   268 IEIVSFLKDTAEQRWQLCKDLLNEMSQQKLRPNLGTLNAVLQCISTFGNFKVARAAALQALPEFK 332
            :..|..::....::|:|..|||.:|::||::|||.||||:|:.:...|  .:.|:.|...:.|.|
Zfish   292 LAAVPAVRPKYNEKWELILDLLKQMAEQKVKPNLLTLNAILKSLRRCG--ALGRSQAFPVISEMK 354

  Fly   333 QLGVNPSLGSYYYLLIIFCRERGPV---SHVIVDILNDISGKEFQIQHPKDTYFFATAMDVCRNH 394
            .|.:.|||.||.:||.||.|....|   :.|:|:::|::|||.|..|.|.|..||.|||.||.: 
Zfish   355 VLSIEPSLASYNHLLAIFYRSGAQVQTPTDVLVEVMNEVSGKSFTPQDPDDAQFFTTAMRVCLD- 418

  Fly   395 LHDKSLAKKVDELLHTGKNYDLVGDSFKESIYYRNYLALLCQTESTEDFMLSYDLLVPNIYIPEP 459
            ..|...|.:|.|||..|.|:..:|..|::||||..:.:|||..|:.:..|..|..|||::|.|..
Zfish   419 TKDMEQAYRVHELLGVGDNWRFMGSDFQQSIYYAWFFSLLCMMENIDVVMKWYRDLVPSVYYPSS 483

  Fly   460 GIMEEILRAIEINGAVEYVPRLWSDMVVFDHTHRESLLLYVLRILVDNKPNPDSPAQAQLPEQGA 524
            ..|.::|||::.:..::.:|::|.||....|.:|:.|:..||.::...|..|      ::.|..|
Zfish   484 NAMSDLLRALDTDSRLDLIPKIWKDMKQLGHGNRQQLVEEVLTLMAREKHCP------EVQESFA 542

  Fly   525 KVALDMFERVEEAIKRLRKVSFTGQMLGDILTLLVRGGSYEKATEVFAHIDKNQHRIPGTPSLNA 589
            ..|||:.:..:...:....:|:|...|.|:.|:|:.....::|.|:. .:.:..:|:|....|| 
Zfish   543 DCALDIMKMYDTNERGKVIMSWTASSLSDVTTILLAANRKQEAWEML-KLFRTHNRVPSAELLN- 605

  Fly   590 LIEFVDASVQEKSPSQALFALQYAVENNF---DSRELAKRIHEGFTLNETHLSKLKSLVGESF 649
              :||....:....|||:..:|  :...|   ::.:|.:|:.:.|.|:|.|.:.|..|..::|
Zfish   606 --QFVTCVKEAGQVSQAVELVQ--ISAAFCLSETPKLIQRVQQEFELSEEHKNILSDLEIQTF 664

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4679NP_610854.1 PLN03218 <210..>348 CDD:215636 43/137 (31%)
PPR repeat 228..255 CDD:276811 9/26 (35%)
PPR repeat 261..295 CDD:276811 9/33 (27%)
ptcd3NP_001032449.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 199..226 6/26 (23%)
PLN03218 <247..>513 CDD:215636 96/268 (36%)
PPR 1 249..283 9/33 (27%)
PPR repeat 252..279 CDD:276811 9/26 (35%)
PPR 2 284..323 12/38 (32%)
PPR repeat 287..319 CDD:276811 9/31 (29%)
PPR 3 324..360 13/37 (35%)
PPR repeat 325..356 CDD:276811 11/32 (34%)
PPR 4 361..400 17/38 (45%)
PPR 5 482..516 9/33 (27%)
PPR 6 565..599 8/34 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594862
Domainoid 1 1.000 144 1.000 Domainoid score I4560
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41211
Inparanoid 1 1.050 316 1.000 Inparanoid score I2530
OMA 1 1.010 - - QHG46509
OrthoDB 1 1.010 - - D197549at33208
OrthoFinder 1 1.000 - - FOG0005556
OrthoInspector 1 1.000 - - oto40236
orthoMCL 1 0.900 - - OOG6_106573
Panther 1 1.100 - - LDO PTHR16276
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4311
SonicParanoid 1 1.000 - - X4519
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1514.940

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