DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pex13 and RhoGEF3

DIOPT Version :9

Sequence 1:NP_610850.1 Gene:Pex13 / 36462 FlyBaseID:FBgn0033812 Length:440 Species:Drosophila melanogaster
Sequence 2:NP_612024.4 Gene:RhoGEF3 / 38050 FlyBaseID:FBgn0264707 Length:3519 Species:Drosophila melanogaster


Alignment Length:447 Identity:90/447 - (20%)
Similarity:145/447 - (32%) Gaps:112/447 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NNLRSAVISDAPLLPPSSSIGV-----GVSSGGGYPPEAVLRT-PYGNVRALPGPAQPPPLPQSP 63
            |....::::...|:|...|:||     .|..||.:||  .:|| |.|....:..||.|....:..
  Fly  2131 NRAHKSIVNVGALVPQQRSVGVPYQQSRVPGGGVFPP--TIRTSPAGAKIHVNSPAPPNSSVRVR 2193

  Fly    64 FQQTQQYGGFGSGYGGNNYGLGGYGGFNSGAFGYGGLGGFGSGLGSGFGSGYGY----------- 117
            ..:|.:...|...|  ||:..||      ||.| .......||.|...||....           
  Fly  2194 HNETDKARSFDFDY--NNFSRGG------GAKG-SSRTAHTSGSGGDSGSNQNLRVERESRSFDD 2249

  Fly   118 ---------GGGYGGGYGGGFGGGYNRFGAMGENDAEQRFIYMAESSSRPAFQSIESLVSAIGNI 173
                     ..|..|...|      .|| .....|:.|  :.||.:||....:| .|.|||.|..
  Fly  2250 EICEAVLNNNNGSNGSVSG------LRF-LQPATDSGQ--VSMASTSSSRLRKS-NSPVSASGME 2304

  Fly   174 ASMLDSTFFALTSSFRAILGVATNFVRLRSVFAQFWTTFAIFRGLNWMYRKI----LYWLRLSNL 234
            ||....:           .|.:||                   .|:...|:.    .|..||.:.
  Fly  2305 ASRSPQS-----------SGSSTN-------------------NLHQQARQSGSPQSYGTRLCDH 2339

  Fly   235 DPSSAAFKKAFAEALNENNGQA---------RGAPNVPRKGNSPWPVLAFISFIFTAPYLIMKLL 290
            :.:....:|  :..:|...|.:         |....:...|||....::..:.|:..|..::|..
  Fly  2340 ELTYEMLRK--SPIMNFRRGDSGDYELPVMLRNRETINSGGNSELNFMSNETRIYEHPTTVLKSQ 2402

  Fly   291 GTVTNTAQEEARNPAKWTAPIQTQAVYEFVARSPSELSLRAGQMLHVAPRDIQQTLNLLNTGW-- 353
            .::..:.........:....:....:|...|..|...|::|..:.....:...:||:..:. |  
  Fly  2403 RSLRQSPGSRDDLNLEVAVGVGGDYIYRQPANQPRSSSVKAEFLTTATTKSCTKTLDTCDY-WPR 2466

  Fly   354 ALATTNGQTSGIIPISYVKSPQQMRQEMQ--DQTKP-----------AQPQPELMNL 397
            ..|..:...||.:.    |.|....:.:.  |..:|           |.|.|:|.:|
  Fly  2467 CAACQHKSVSGELK----KGPSASGKPLTVLDNVQPHVTSVIVNEDNAVPGPQLRSL 2519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pex13NP_610850.1 Peroxin-13_N 140..290 CDD:282008 32/162 (20%)
SH3_PEX13_eumet 312..373 CDD:212798 11/62 (18%)
RhoGEF3NP_612024.4 DUF4802 <754..>790 CDD:292678
SH3 2876..2942 CDD:214620
RhoGEF 3031..3235 CDD:279015
PH_Collybistin_ASEF 3240..3373 CDD:269931
PH <3285..3363 CDD:278594
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1291
SonicParanoid 00.000 Not matched by this tool.
11.030

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