DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dp and e2f3

DIOPT Version :9

Sequence 1:NP_477039.1 Gene:Dp / 36461 FlyBaseID:FBgn0011763 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_001011109.1 Gene:e2f3 / 496522 XenbaseID:XB-GENE-974737 Length:427 Species:Xenopus tropicalis


Alignment Length:413 Identity:89/413 - (21%)
Similarity:144/413 - (34%) Gaps:89/413 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 RNEHGQISKMLKPAQNKSEMEGGKPVAVVYATGSSARNSGSASGIGNVGRMGAFSQMGSQGQFIR 83
            :...|...|:|.|....::...|       ..|......|...|.|..|.:...|..|..     
 Frog     3 KGTQGGHEKLLLPGLQGTDKGSG-------LAGGFIAGGGGVVGAGGGGYVQIISSPGPP----- 55

  Fly    84 LQDNGLSIPKTEAGTTYTTVSAQKTSGAGSGHYDL---PLK-----GDRYVKFTPNPIKM-KSKL 139
            |..:||.||:..|...|:|.....|. ||.....|   |.|     ||...::..:.:|. |.|.
 Frog    56 LHHHGLCIPEQAASFIYSTPHGPATR-AGQLQPALGRPPAKRRLELGDGSHQYLSDGLKTPKGKG 119

  Fly   140 HAIQSNSLHSMSASSSSVQRKRKPDKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDLVSEEMKNN 204
            .|: ::...|.....|.:::.|.....|...:.|...:.:..:  |....|..|:.|        
 Frog   120 RAV-THCPDSPKTPKSPLEKTRYDTSLGLLTKKFIQLLSQSSD--GVVDLNRAAEVL-------- 173

  Fly   205 AYDNNCDQKNIRRRVYDALNVLMAINVI-SKDKKEIRWIGLPANSTETFLALEEENCQRRERIKQ 268
                    |..:||:||..|||..|::| .|.|..|:|:|.........||..:|..:....:.|
 Frog   174 --------KVQKRRIYDITNVLEGIHLIKKKSKNNIQWMGCTLPDDGGNLAKSQELSKELSELAQ 230

  Fly   269 KNEMLREMI------MQHVA------------------FKGLVER-----NKRNESQGVVPSPNA 304
            :...|.|:|      ::|:.                  ..||.|:     ....|::..||.|..
 Frog   231 EENKLDELIKNCTLDLKHLTENAENQRLAYVTYQDIRKISGLKEQTVIVIRAPPETRLEVPDPVE 295

  Fly   305 SIQLPFIIVNTHKSTK---INCSVTNDKSEYIFKFDKTFEMHDDIEVLK-----RMGFLLGLDKG 361
            |:|:       |.|:.   |...:..::||......:..:.|:. .|.|     :......::..
 Frog   296 SLQI-------HLSSSQGAIEVYLCPEESESSSPVKQCNQDHNG-NVSKPKPHSKDSLSPNMENV 352

  Fly   362 ECTPENIERVKSWVPPNLAKYVE 384
            .|:.|.|..:.|  |.||.:..|
 Frog   353 NCSVEGISPLTS--PTNLLQQTE 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DpNP_477039.1 E2F_TDP 167..243 CDD:280479 20/76 (26%)
coiled coil 248..294 CDD:271217 11/74 (15%)
DP 255..388 CDD:285934 31/167 (19%)
e2f3NP_001011109.1 E2F_TDP 141..205 CDD:367033 20/81 (25%)
E2F_DD 216..316 CDD:271137 19/106 (18%)
coiled coil 216..251 CDD:271137 7/34 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.