DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dp and E2F1

DIOPT Version :9

Sequence 1:NP_477039.1 Gene:Dp / 36461 FlyBaseID:FBgn0011763 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_005216.1 Gene:E2F1 / 1869 HGNCID:3113 Length:437 Species:Homo sapiens


Alignment Length:390 Identity:72/390 - (18%)
Similarity:129/390 - (33%) Gaps:147/390 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 PIKMKSKLHAIQSNSLHSMSASSSSVQRKRKPDKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDL 196
            |:|.:..|   :::..:...:|..:..|.|.|   |||           |:..|:.:..|.:.:|
Human    87 PVKRRLDL---ETDHQYLAESSGPARGRGRHP---GKG-----------VKSPGEKSRYETSLNL 134

  Fly   197 VSE---EMKNNAYDNNCD-------QKNIRRRVYDALNVLMAINVIS-KDKKEIRWIG------- 243
            .::   |:.:::.|...|       .|..:||:||..|||..|.:|: |.|..|:|:|       
Human   135 TTKRFLELLSHSADGVVDLNWAAEVLKVQKRRIYDITNVLEGIQLIAKKSKNHIQWLGSHTTVGV 199

  Fly   244 ------------------------LPANSTETFLALEEENCQRR-----ERIKQKNEMLREMIMQ 279
                                    :...:|:..|..|:.:.||.     :.::...:...:|:| 
Human   200 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVM- 263

  Fly   280 HVAFKGLVERNKRNESQGVVPSPNASIQL-------------------------PFIIVNTHKST 319
                  :::.....:.|.|..|.|..|.|                         |...|.:.:..
Human   264 ------VIKAPPETQLQAVDSSENFQISLKSKQGPIDVFLCPEETVGGISPGKTPSQEVTSEEEN 322

  Fly   320 KIN--------------CSVTNDKSEYIFKFDKTFEMHDDIEVLKRMGFLLGLDKGECTPENIER 370
            :..              .|:|.|.|:.:...::.       .:|.|||.|.       .|.:.:|
Human   323 RATDSATIVSPPPSSPPSSLTTDPSQSLLSLEQE-------PLLSRMGSLR-------APVDEDR 373

  Fly   371 VKSWVPPNLAKYVEAYGTGKTGENMYESDDEDNEFNGYLESANESQGFAQHSAQH-TTDGEFKLE 434
            :...|               ..:::.|...||  |:|.|     .:.|...|..| ..|..|.||
Human   374 LSPLV---------------AADSLLEHVRED--FSGLL-----PEEFISLSPPHEALDYHFGLE 416

  Fly   435  434
            Human   417  416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DpNP_477039.1 E2F_TDP 167..243 CDD:280479 24/86 (28%)
coiled coil 248..294 CDD:271217 7/50 (14%)
DP 255..388 CDD:285934 25/176 (14%)
E2F1NP_005216.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..87 72/390 (18%)
Cyclin A:CDK2 binding. /evidence=ECO:0000269|PubMed:8033208 67..108 4/23 (17%)
Interaction with BIRC2/c-IAP1. /evidence=ECO:0000269|PubMed:21653699 89..191 29/118 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 101..128 9/40 (23%)
E2F_TDP 129..192 CDD:280479 19/62 (31%)
Leucine-zipper 153..174 6/20 (30%)
DEF box 158..194 15/35 (43%)
Required for interaction with TRIM28. /evidence=ECO:0000269|PubMed:17704056 192..382 28/225 (12%)
Dimerization. /evidence=ECO:0000255 195..284 11/95 (12%)
E2F_DD 202..301 CDD:271137 13/105 (12%)
coiled coil 202..236 CDD:271137 2/33 (6%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 300..349 6/48 (13%)
Transactivation 368..437 16/71 (23%)
RB1 binding. /evidence=ECO:0000269|PubMed:12598654 409..426 4/8 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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