DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fsn and Spsb1

DIOPT Version :9

Sequence 1:NP_610849.1 Gene:Fsn / 36460 FlyBaseID:FBgn0043010 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_001101464.1 Gene:Spsb1 / 313722 RGDID:1309319 Length:273 Species:Rattus norvegicus


Alignment Length:193 Identity:86/193 - (44%)
Similarity:120/193 - (62%) Gaps:10/193 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 DLLASVS--TYKTKLRAYFHAWSPNDCSRNVYIKPNG-FTLHRNPVAQSTDAARGKIGFRHGRHT 125
            |||..:.  :|..:|   .|:|:.||.|.||::|.:. ...||:||||||||.|||:|:..|.|.
  Rat    38 DLLLDMPPVSYDVQL---LHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHV 99

  Fly   126 WEVIWE-GPLGTVAVIGISTKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQGS--YP-L 186
            |::.|. ...||.||:|::|.:|.|...||..|:|::.:||||:|..|.|.|:|..|.|  || .
  Rat   100 WQITWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAF 164

  Fly   187 LNNAPKYQVGERIRVILDCEDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSMVYL 249
            |.....:.|.:...|.||.:|.||||..:.:::|||||||..|||||.||||:|:.|:.|.|:
  Rat   165 LEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLKGKKLYPVVSAVWGHCEIRMRYV 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FsnNP_610849.1 F-box-like 13..54 CDD:289689
SPRY_Fbox 81..255 CDD:293964 81/174 (47%)
Spsb1NP_001101464.1 SPRY_SOCS1-2-4 54..227 CDD:293963 80/172 (47%)
SOCS 232..273 CDD:413360
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3953
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.