DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fsn and Spsb2

DIOPT Version :9

Sequence 1:NP_610849.1 Gene:Fsn / 36460 FlyBaseID:FBgn0043010 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_001009660.1 Gene:Spsb2 / 297592 RGDID:1310854 Length:264 Species:Rattus norvegicus


Alignment Length:175 Identity:80/175 - (45%)
Similarity:103/175 - (58%) Gaps:7/175 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 HAWSPNDCSRNVYIKPNGFTLHRNPVAQSTDAARGKIGFRHGRHTWEVIWEGPL---GTVAVIGI 142
            |.|:|.|||.|:.:|..|....|.|||||||..|||.|:..|.|.||:.|  ||   ||.||:|:
  Rat    46 HGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISW--PLEQRGTHAVVGV 108

  Fly   143 STKEAALQCHGYVALLGSDDQSWGWNLVENHLLH--NGDMQGSYPLLNNAPKYQVGERIRVILDC 205
            :|..|.||...|.|||||:.:||||::....|.|  .|.....||......:..|.||:.|:||.
  Rat   109 ATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDM 173

  Fly   206 EDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSMVYLG 250
            |:.||.:.....:||.|||||..:.|||:||||:|..:|.:.|||
  Rat   174 EEGTLGYSIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQVRIRYLG 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FsnNP_610849.1 F-box-like 13..54 CDD:289689
SPRY_Fbox 81..255 CDD:293964 80/175 (46%)
Spsb2NP_001009660.1 SPRY_SOCS1-2-4 46..217 CDD:293963 77/172 (45%)
SOCS_SSB2 223..264 CDD:239689
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3953
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.