DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spt-I and LCB2

DIOPT Version :9

Sequence 1:NP_610842.1 Gene:Spt-I / 36448 FlyBaseID:FBgn0086532 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_010347.1 Gene:LCB2 / 851634 SGDID:S000002469 Length:561 Species:Saccharomyces cerevisiae


Alignment Length:388 Identity:125/388 - (32%)
Similarity:195/388 - (50%) Gaps:34/388 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 HDCLNLGSHNYLGFLEDQ-EILEEACKSLRKYGVGSCGPRGFYGTMDVHLDLEDRIAKFMGLEEA 157
            :.|:||.|:|||||.:.: :..:.|.:|:.||.:.|.|||...||.|:|:..|..:|:|:|.|:|
Yeast   155 YPCMNLSSYNYLGFAQSKGQCTDAALESVDKYSIQSGGPRAQIGTTDLHIKAEKLVARFIGKEDA 219

  Fly   158 IVYSYGFSTVASAIPAYAKRGDLIFVDEAVNFAIQKGLDASRSTIVFFKHNDVEDLERLLIEQEK 222
            :|:|.|:.|.|:...|:..:..|:..||..:.:|:.|:..|.:.:..|||.|:..||:|:.||..
Yeast   220 LVFSMGYGTNANLFNAFLDKKCLVISDELNHTSIRTGVRLSGAAVRTFKHGDMVGLEKLIREQIV 284

  Fly   223 RDQKNPKKAAKTRRFLV-AEGIYMNTGEICPLPDLVALRQKYKLRLFIDESISFGTLGQGGHGVT 286
            ..|  ||.....::.|: |||::...|.:|.||.||.|::|||..|||||:.|.|.:|..|.||.
Yeast   285 LGQ--PKTNRPWKKILICAEGLFSMEGTLCNLPKLVELKKKYKCYLFIDEAHSIGAMGPTGRGVC 347

  Fly   287 EHFNVDRDEVDLISAGMEGSMATVGGFCVGSHFIAEHQRLSGLGYIFSASLP-PMLTQAAISALD 350
            |.|.||..:||::......|....||:.....:|.:..||......:|.|:| |:|.| .||:|.
Yeast   348 EIFGVDPKDVDILMGTFTKSFGAAGGYIAADQWIIDRLRLDLTTVSYSESMPAPVLAQ-TISSLQ 411

  Fly   351 RFERE---PQIFEQLQAKSKTLHQKFLRFSKLTL----RGDEVSPVKHLYLAQPAENFDKELKLL 408
            ....|   .|..|:||..:  .:.::||.:...|    .|...|||..|.|..|::        :
Yeast   412 TISGEICPGQGTERLQRIA--FNSRYLRLALQRLGFIVYGVADSPVIPLLLYCPSK--------M 466

  Fly   409 TELADKCIARGVAVVQAAYLQNRERQPVRP----SIRIAVNRLLESSEIDNAFEVIESVSSSV 467
            ...:...:.|.:|||..||       |..|    .:|..::..|...:||.....:..|...:
Yeast   467 PAFSRMMLQRRIAVVVVAY-------PATPLIESRVRFCMSASLTKEDIDYLLRHVSEVGDKL 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spt-INP_610842.1 AAT_I 22..468 CDD:302748 125/388 (32%)
BioF 79..463 CDD:223234 124/382 (32%)
LCB2NP_010347.1 AAT_I 57..525 CDD:418510 125/388 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0156
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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