DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spt-I and SPT1

DIOPT Version :9

Sequence 1:NP_610842.1 Gene:Spt-I / 36448 FlyBaseID:FBgn0086532 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001325849.1 Gene:SPT1 / 824039 AraportID:AT3G48780 Length:489 Species:Arabidopsis thaliana


Alignment Length:404 Identity:119/404 - (29%)
Similarity:194/404 - (48%) Gaps:41/404 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 TDPNHPLLHTRVVQSRVGKRIQVDGHDCLNLGSHNYLGFLE-DQEILEEACKSLRKYGVGSCGPR 132
            :|.|:..|......||           ||||||:|||||.. |:.......:||:|:...:|..|
plant    86 SDDNNKTLKRTTKTSR-----------CLNLGSYNYLGFGSFDEYCTPRVIESLKKFSASTCSSR 139

  Fly   133 GFYGTMDVHLDLEDRIAKFMGLEEAIVYSYGFSTVASAIPAYAKRGDLIFVDEAVNFAIQKGLDA 197
            ...||..||.:|||.:||::|...|:::..|::|.::.||....:|.||..|...:.:|..|...
plant   140 VDAGTTSVHAELEDCVAKYVGQPAAVIFGMGYATNSAIIPVLIGKGGLIISDSLNHTSIVNGARG 204

  Fly   198 SRSTIVFFKHNDVEDLERLLIEQEKRDQKNPKKAAKTRRFLVAEGIYMNTGEICPLPDLVALRQK 262
            |.:||..|:||....||::|.||....|....:..| :..:|.||||...||||.||::|::.:|
plant   205 SGATIRVFQHNTPGHLEKVLKEQIAEGQPRTHRPWK-KIIVVVEGIYSMEGEICHLPEIVSICKK 268

  Fly   263 YKLRLFIDESISFGTLGQGGHGVTEHFNVDRDEVDLISAGMEGSMATVGGFCVGSHFIAEHQRLS 327
            ||..:::||:.|.|.:|:.|.||.|...||..:||::......|..:.||:..||..:.::.:..
plant   269 YKAYVYLDEAHSIGAIGKTGRGVCELLGVDTSDVDIMMGTFTKSFGSCGGYIAGSKDLIQYLKHQ 333

  Fly   328 GLGYIFSASL-PPMLTQAAISAL------DRFEREPQIFEQLQAKSKTLHQKFLRFSKLTLRGDE 385
            ...::::.|: .|..|| .|||:      |...|..|...:::..|.....:..:.. ..:.||.
plant   334 CPAHLYATSISTPSATQ-IISAIKVILGEDGSNRGAQKLARIRENSNFFRAELQKMG-FEVLGDN 396

  Fly   386 VSPVKHLYLAQPAENFDKELKLLTELADKCIARGVAVVQAAYLQNRERQPVRPSI----RIAVNR 446
            .|||..:.|..||:        :...:.:|:...:|||...:       |..|.:    ||.::.
plant   397 DSPVMPIMLYNPAK--------IPAFSRECLRENLAVVVVGF-------PATPLLLARARICISA 446

  Fly   447 LLESSEIDNAFEVI 460
            .....::..|.:||
plant   447 SHSREDLIKALQVI 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spt-INP_610842.1 AAT_I 22..468 CDD:302748 119/404 (29%)
BioF 79..463 CDD:223234 116/394 (29%)
SPT1NP_001325849.1 PLN02483 1..489 CDD:178101 119/404 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0156
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D438936at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.