DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spt-I and sptlc3

DIOPT Version :9

Sequence 1:NP_610842.1 Gene:Spt-I / 36448 FlyBaseID:FBgn0086532 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001003562.2 Gene:sptlc3 / 445168 ZFINID:ZDB-GENE-041210-281 Length:553 Species:Danio rerio


Alignment Length:420 Identity:120/420 - (28%)
Similarity:196/420 - (46%) Gaps:78/420 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 GKRIQVDGHDCLNLGSHNYLGFLEDQ-EILEEACKSLRKYGVGSCGPRGFYGTMDVHLDLEDRIA 149
            |:.|:    :.:|:||:|||||.|:. :.|:...:..|:||||.|..|...|...:|.:||..:|
Zfish   157 GRTIE----NVINMGSYNYLGFAENNVDFLKTVAEKTRQYGVGVCSTRQELGNFSIHEELEHLVA 217

  Fly   150 KFMGLEEAIVYSYGFSTVASAIPAYAKRGDLIFVDEAVNFAIQKGLDASRSTIVFFKHNDVEDLE 214
            .|:|:|.|:.:..||:|.:..|||...:|.||..||..:.::..|...|.:||..||||:::.||
Zfish   218 DFLGVESAMAFGMGFATNSMNIPALVGKGCLILSDELNHTSLILGARLSGATIRVFKHNNMQSLE 282

  Fly   215 RLLIEQ----EKRDQKNPKKAAKTRRFLVAEGIYMNTGEICPLPDLVALRQKYKLRLFIDESISF 275
            :||.|.    :.|..::.||.     .::.||||...|.:..||:::||::|||..|::||:.|.
Zfish   283 KLLKEAICSGQPRTHRSWKKI-----LIMVEGIYSMEGSLVRLPEIIALKKKYKAYLYLDEAHSI 342

  Fly   276 GTLGQGGHGVTEHFNVDRDEVDLISAGMEGSMATVGGFCVGSHFIAEHQRLSGLGYIFSASLPPM 340
            |.:|..|.||||||.||..|:|::......|....||:..|...:.::.|......:::.::.|.
Zfish   343 GAVGPTGRGVTEHFGVDPKEIDVLMGTFTKSFGATGGYIAGKKELVDYLRCHSHSAVYATAMSPP 407

  Fly   341 LTQAAISAL------DRFEREPQIFEQLQAKSKTLHQKFLRFSKLTLRGDEVSPVKHLYLAQPA- 398
            :.:..|.|:      |......:...|| |::....:..|:.....:.|::.|||..|.|.||. 
Zfish   408 VVEQIIRAIKCIMGVDGTTEGQRRVRQL-AENTHYFRSRLKEMGFIIYGNKDSPVIPLLLYQPGK 471

  Fly   399 ----------------------------------------ENFDKELKLLTELADKCIARGVAVV 423
                                                    :..:|.|:.|.||.|          
Zfish   472 VGAFSRAMLKRKIGVVVVGFPATTITEARARFCVSAAHTRDMLNKVLQSLDELGD---------- 526

  Fly   424 QAAYLQ---NRERQPVRPSIRIAVNRLLES 450
               |::   :|.|:|.||.:....|..|:|
Zfish   527 ---YIRVKFSRHRRPYRPELYNVTNFGLDS 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spt-INP_610842.1 AAT_I 22..468 CDD:302748 120/420 (29%)
BioF 79..463 CDD:223234 120/420 (29%)
sptlc3NP_001003562.2 PLN02483 58..535 CDD:178101 112/400 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0156
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D312139at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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