DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spt-I and sptlc3

DIOPT Version :10

Sequence 1:NP_610842.1 Gene:Spt-I / 36448 FlyBaseID:FBgn0086532 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001003562.2 Gene:sptlc3 / 445168 ZFINID:ZDB-GENE-041210-281 Length:553 Species:Danio rerio


Alignment Length:420 Identity:120/420 - (28%)
Similarity:196/420 - (46%) Gaps:78/420 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 GKRIQVDGHDCLNLGSHNYLGFLEDQ-EILEEACKSLRKYGVGSCGPRGFYGTMDVHLDLEDRIA 149
            |:.|:    :.:|:||:|||||.|:. :.|:...:..|:||||.|..|...|...:|.:||..:|
Zfish   157 GRTIE----NVINMGSYNYLGFAENNVDFLKTVAEKTRQYGVGVCSTRQELGNFSIHEELEHLVA 217

  Fly   150 KFMGLEEAIVYSYGFSTVASAIPAYAKRGDLIFVDEAVNFAIQKGLDASRSTIVFFKHNDVEDLE 214
            .|:|:|.|:.:..||:|.:..|||...:|.||..||..:.::..|...|.:||..||||:::.||
Zfish   218 DFLGVESAMAFGMGFATNSMNIPALVGKGCLILSDELNHTSLILGARLSGATIRVFKHNNMQSLE 282

  Fly   215 RLLIEQ----EKRDQKNPKKAAKTRRFLVAEGIYMNTGEICPLPDLVALRQKYKLRLFIDESISF 275
            :||.|.    :.|..::.||.     .::.||||...|.:..||:::||::|||..|::||:.|.
Zfish   283 KLLKEAICSGQPRTHRSWKKI-----LIMVEGIYSMEGSLVRLPEIIALKKKYKAYLYLDEAHSI 342

  Fly   276 GTLGQGGHGVTEHFNVDRDEVDLISAGMEGSMATVGGFCVGSHFIAEHQRLSGLGYIFSASLPPM 340
            |.:|..|.||||||.||..|:|::......|....||:..|...:.::.|......:::.::.|.
Zfish   343 GAVGPTGRGVTEHFGVDPKEIDVLMGTFTKSFGATGGYIAGKKELVDYLRCHSHSAVYATAMSPP 407

  Fly   341 LTQAAISAL------DRFEREPQIFEQLQAKSKTLHQKFLRFSKLTLRGDEVSPVKHLYLAQPA- 398
            :.:..|.|:      |......:...|| |::....:..|:.....:.|::.|||..|.|.||. 
Zfish   408 VVEQIIRAIKCIMGVDGTTEGQRRVRQL-AENTHYFRSRLKEMGFIIYGNKDSPVIPLLLYQPGK 471

  Fly   399 ----------------------------------------ENFDKELKLLTELADKCIARGVAVV 423
                                                    :..:|.|:.|.||.|          
Zfish   472 VGAFSRAMLKRKIGVVVVGFPATTITEARARFCVSAAHTRDMLNKVLQSLDELGD---------- 526

  Fly   424 QAAYLQ---NRERQPVRPSIRIAVNRLLES 450
               |::   :|.|:|.||.:....|..|:|
Zfish   527 ---YIRVKFSRHRRPYRPELYNVTNFGLDS 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spt-INP_610842.1 AAT_I 22..468 CDD:450240 120/420 (29%)
sptlc3NP_001003562.2 AAT_I 58..535 CDD:450240 112/400 (28%)

Return to query results.
Submit another query.