DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spt-I and Sptlc1

DIOPT Version :9

Sequence 1:NP_610842.1 Gene:Spt-I / 36448 FlyBaseID:FBgn0086532 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001101876.1 Gene:Sptlc1 / 361213 RGDID:1307140 Length:473 Species:Rattus norvegicus


Alignment Length:452 Identity:234/452 - (51%)
Similarity:312/452 - (69%) Gaps:1/452 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 PTFALVLETLLLITVIWLLLHRRGG-GRRRQLTKEEEDRIIADYEPEPLVADTDPNHPLLHTRVV 81
            |.:.|:||.:|::.:|.|:..:... ..|..||.:|::.:|.:::|||||.....|||.|:..:|
  Rat    21 PAYHLILEGILILWIIRLVFSKTYKLQERSDLTAKEKEELIEEWQPEPLVPPVSRNHPALNYNIV 85

  Fly    82 QSRVGKRIQVDGHDCLNLGSHNYLGFLEDQEILEEACKSLRKYGVGSCGPRGFYGTMDVHLDLED 146
            .......|.|:|.:|:|..|.|:||.|.:..:...|..||:|||||:|||||||||.|||||||:
  Rat    86 SGPPTHNIVVNGKECVNFASFNFLGLLANPRVKAAAFASLKKYGVGTCGPRGFYGTFDVHLDLEE 150

  Fly   147 RIAKFMGLEEAIVYSYGFSTVASAIPAYAKRGDLIFVDEAVNFAIQKGLDASRSTIVFFKHNDVE 211
            |:||||..||||:|||||||:|||||||:||||::|||.|..|||||||.||||.|..||||||.
  Rat   151 RLAKFMKTEEAIIYSYGFSTIASAIPAYSKRGDIVFVDSAACFAIQKGLQASRSDIKLFKHNDVA 215

  Fly   212 DLERLLIEQEKRDQKNPKKAAKTRRFLVAEGIYMNTGEICPLPDLVALRQKYKLRLFIDESISFG 276
            ||||||.|||..|||||:||..||||:||||:|||||.|||||:||.|:.|||.|:|::||:|||
  Rat   216 DLERLLKEQEIEDQKNPRKARVTRRFIVAEGLYMNTGTICPLPELVRLKYKYKARIFLEESLSFG 280

  Fly   277 TLGQGGHGVTEHFNVDRDEVDLISAGMEGSMATVGGFCVGSHFIAEHQRLSGLGYIFSASLPPML 341
            .||:.|.|||||:.:..|::|||||.||.::|:|||||.|..|:.:||||||.||.|||||||:|
  Rat   281 VLGEHGRGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFSASLPPLL 345

  Fly   342 TQAAISALDRFEREPQIFEQLQAKSKTLHQKFLRFSKLTLRGDEVSPVKHLYLAQPAENFDKELK 406
            ..|||.||:..|..|.||..|:.|.:|:|:.....|.|.:.|:.:.|..||.|.:...:.::::|
  Rat   346 AAAAIEALNIMEENPGIFAVLKKKCQTIHKSLQGVSGLKVVGESLCPALHLQLEESTGSRERDMK 410

  Fly   407 LLTELADKCIARGVAVVQAAYLQNRERQPVRPSIRIAVNRLLESSEIDNAFEVIESVSSSVL 468
            ||.|:.::|:.:|:|:.||.||...|:....||||:.|.......|:..|...|...:.:||
  Rat   411 LLQEIVEQCMNKGIALTQARYLDKEEKCLPPPSIRVVVTVEQTDEELQRAAATIREAAQAVL 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spt-INP_610842.1 AAT_I 22..468 CDD:302748 231/446 (52%)
BioF 79..463 CDD:223234 211/383 (55%)
Sptlc1NP_001101876.1 Beta_elim_lyase 11..472 CDD:354370 232/450 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341030
Domainoid 1 1.000 424 1.000 Domainoid score I600
eggNOG 1 0.900 - - E1_COG0156
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4681
Inparanoid 1 1.050 470 1.000 Inparanoid score I1460
OMA 1 1.010 - - QHG54231
OrthoDB 1 1.010 - - D312139at33208
OrthoFinder 1 1.000 - - FOG0004733
OrthoInspector 1 1.000 - - oto95847
orthoMCL 1 0.900 - - OOG6_102559
Panther 1 1.100 - - LDO PTHR13693
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3331
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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