DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spt-I and sptlc3

DIOPT Version :9

Sequence 1:NP_610842.1 Gene:Spt-I / 36448 FlyBaseID:FBgn0086532 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_002931785.2 Gene:sptlc3 / 100487030 XenbaseID:XB-GENE-5791607 Length:562 Species:Xenopus tropicalis


Alignment Length:424 Identity:132/424 - (31%)
Similarity:209/424 - (49%) Gaps:46/424 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 FRNTPTFALVLETLLLITVIWLL-----LHRRGGGRRRQLTKEEEDR-----IIADYE------- 61
            |...|.:..|| |.:...|:.|.     ..|..|..:..:.:|.|::     :..|:|       
 Frog    65 FEEAPIYVAVL-TYIGYGVVTLFGYLRDFMRAWGLEKCHMAEEREEQKDFVPLYQDFENFYTRNL 128

  Fly    62 --------PEPLVADTDPNHPLLHTRVVQS------RVGKRIQVDGHDCLNLGSHNYLGFLE-DQ 111
                    ..|:.:...|...|:. |:...      ..||.|:    |.:|:||:|||||.| |.
 Frog   129 YMRVRDNWNRPICSVPGPQFDLME-RLTDDYNWTYRYTGKVIK----DVINMGSYNYLGFAENDP 188

  Fly   112 EILEEACKSLRKYGVGSCGPRGFYGTMDVHLDLEDRIAKFMGLEEAIVYSYGFSTVASAIPAYAK 176
            |.|......::.||||.|..|...|.:|.|.:|||.:|:|:|:|||:|:|.||:|.:..|||...
 Frog   189 ESLVSVKDVVQSYGVGVCSTRQEMGHLDNHKELEDLVAEFLGVEEAMVFSMGFATNSMNIPALVG 253

  Fly   177 RGDLIFVDEAVNFAIQKGLDASRSTIVFFKHNDVEDLERLLIEQEKRDQKNPKKAAKTRRFLVAE 241
            :|.||..||..:.::..|...|.:||..||||::::||:.|.:.....|....:|.| :..::.|
 Frog   254 KGCLILSDELNHTSLILGARLSGATIRIFKHNNMQNLEKQLRDAVVNGQPRTHRAWK-KILILVE 317

  Fly   242 GIYMNTGEICPLPDLVALRQKYKLRLFIDESISFGTLGQGGHGVTEHFNVDRDEVDLISAGMEGS 306
            |||...|.|..||::|||::|||..|::||:.|.|.:|..|.||.|:|.:|..::|::......|
 Frog   318 GIYSMEGSIARLPEIVALKKKYKAYLYLDEAHSIGAVGATGRGVVEYFGMDPTDIDVLMGTFTKS 382

  Fly   307 MATVGGFCVGSHFIAEHQRLSGLGYIFSASLPPMLTQ------AAISALDRFEREPQIFEQLQAK 365
            ....||:..|...:.::.|......:::||:||.:|:      ..|..||......:..:||:|.
 Frog   383 FGAAGGYIAGRKTLVDYLRTHSHSAVYAASMPPPITEQIIRVLKCIMGLDGTLIGLKRVQQLEAN 447

  Fly   366 SKTLHQKFLRFSKLTLRGDEVSPVKHLYLAQPAE 399
            ::...|| ||.......|:|.|||..:.|..|.:
 Frog   448 TRYFRQK-LRDVGFITYGNEDSPVIPVLLYMPGK 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spt-INP_610842.1 AAT_I 22..468 CDD:302748 130/416 (31%)
BioF 79..463 CDD:223234 116/334 (35%)
sptlc3XP_002931785.2 PLN02483 67..559 CDD:178101 131/422 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D312139at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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