DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nrk and ntrk3a

DIOPT Version :9

Sequence 1:NP_477255.1 Gene:Nrk / 36445 FlyBaseID:FBgn0020391 Length:724 Species:Drosophila melanogaster
Sequence 2:NP_001243593.1 Gene:ntrk3a / 568668 ZFINID:ZDB-GENE-010126-3 Length:818 Species:Danio rerio


Alignment Length:610 Identity:193/610 - (31%)
Similarity:267/610 - (43%) Gaps:148/610 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 SLPHYNASMRRPNCSYIGLTELKESEVSYDCRNGNG----------------------RFYMGTM 231
            |:..:.|:...||...|.||.:..|      |:.||                      :|....:
Zfish   247 SINTHQANQYPPNVHSINLTLVNVS------RDDNGFMLTCIAENIVGMTNASIQLSV
QFPPAII 305

  Fly   232 N---------------VSKSGIPCQRWD--------TQYPHKHFQPPLVFHQLLEG----ENYCR 269
            |               |..:.:|...|.        |:|.|...:   |:...|||    :|..:
Zfish   306 NFEEPQKRHDTCMMFTVRANPLPTLHWSFKGEEIKATEYVHPEME---VYQDNLEGCLLFKNPTQ 367

  Fly   270 NAGGEEPHPWCYTVDES-----------VRWQHCDIPMCPDYVD--PNAVDLNTPIKMEKFFTPS 321
            :..|.      ||::..           ..:.|......||||.  |.|:...|....|..|..|
Zfish   368 HNNGN------YTLEARNYLGVAVKTVYAHFLHPPFEDYPDYVSPTPTAIPTMTHRPEEDTFGVS 426

  Fly   322 MIFLLAGIGFVAIVTLHLMILLVYKLSKHKDYSQPAGAATAECSVSMRGGGDCGGNLNTSRETLG 386
            :...|||.   |.|.|.:|.:|:.|..:...:......|.      :.|..|....|:       
Zfish   427 IAVGLAGF---ACVLLVVMFVLINKYGRRSKFGMKGPVAV------ISGEEDSASPLH------- 475

  Fly   387 GNGNTNTLAKWGTIRSTATIHSNCVALTTVTNVSDAKGTKPNA------RLEKLEYP-------- 437
                                |.|...:|..|  .||   .|:|      |:..:|.|        
Zfish   476 --------------------HVNHGIITPCT--LDA---GPDAVVIGMTRIPVIENPQYFRHGHN 515

  Fly   438 ------------RGDIVYVRSLGQGAFGRVFQARAPGLVPDQEDLLVAVKMLKDDASDQMQMDFE 490
                        |.|||..|.||:||||:||.|....|.|.::.:|||||.|||... ..:.||:
Zfish   516 CNKPATYVQHIKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKTLKDPTL-AARKDFQ 579

  Fly   491 REACLLAEFDHPNIVRLLGVCALGRPMCLLFEYMAPGDLSEFLRACSPYA---THQAPTQDRLQL 552
            |||.||....|.:||:..|||..|.|:.::||||..|||::||||..|.|   ....|.|...:|
Zfish   580 REAELLTNLQHEHIVKFYGVCVDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPLQTNGEL 644

  Fly   553 NELHLLQMAANIAAGMLYLSERKFVHRDLATRNCLINEHMAVKIADFGLSHKIYLQDYYKGDEND 617
            ....:|.:|:.||:||:||..:.||||||||||||:...:.|||.|||:|..||..|||:...:.
Zfish   645 GLSQMLHIASQIASGMVYLGSQHFVHRDLATRNCLVGNGLLVKIGDFGMSRDIYSTDYYRVGGHT 709

  Fly   618 FIPIRWMPLESILYNKFSLESDVWAYGICLWEVFSFALQPYFGLTHEEVIKYIKEGNVLGCPDNT 682
            .:||||||.|||:|.||:.|||||::|:.|||:|::..||:|.|.:.|||:.|.:|.||..|...
Zfish   710 MLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLANNEVIECITQGRVLERPRLC 774

  Fly   683 PLSVYALMRRCWNRKPSERPGFAEI 707
            |..||.:|..||.|:|.:|....:|
Zfish   775 PKEVYDIMLGCWQREPQQRLNIKDI 799

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NrkNP_477255.1 CRD_FZ 67..212 CDD:295308 7/22 (32%)
KR 217..299 CDD:214527 20/141 (14%)
PTKc_Musk 435..713 CDD:133181 133/296 (45%)
Pkinase_Tyr 441..707 CDD:285015 128/268 (48%)
ntrk3aNP_001243593.1 LRR_8 101..157 CDD:290566
leucine-rich repeat 103..126 CDD:275378
leucine-rich repeat 127..150 CDD:275378
TPKR_C2 161..205 CDD:293525
I-set 207..298 CDD:254352 11/56 (20%)
Ig_TrkABC_d4 208..298 CDD:143173 11/56 (20%)
Ig 316..393 CDD:299845 14/85 (16%)
PTKc_TrkC 525..811 CDD:270676 131/276 (47%)
STYKc 531..803 CDD:214568 129/270 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1026
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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