DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nrk and ntrk1

DIOPT Version :9

Sequence 1:NP_477255.1 Gene:Nrk / 36445 FlyBaseID:FBgn0020391 Length:724 Species:Drosophila melanogaster
Sequence 2:NP_001288285.1 Gene:ntrk1 / 30546 ZFINID:ZDB-GENE-980526-118 Length:797 Species:Danio rerio


Alignment Length:519 Identity:169/519 - (32%)
Similarity:250/519 - (48%) Gaps:113/519 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   267 YCRNAGGEEPHPWC--YTVDE----SVRWQHCDIPMCP----------DYVDPN----AVDLNTP 311
            |.:|.  |..|.||  :.||.    |::|.:.::|:..          |..|.:    .:.||.|
Zfish   283 YLKNP--ESQHHWCFPFAVDSNPPASIKWLYNNMPLTETRYAYTELIRDVYDGSQQHGCLFLNKP 345

  Fly   312 -----------IK--------------MEKFFTP----------------------------SMI 323
                       :|              |:..|.|                            |.:
Zfish   346 THLNNGNYTIIVKNKLGRDQRTVRAKFMDNPFDPSDPEGIIPVLNDDPTAPTNQSTETEKIESRV 410

  Fly   324 F---LLAGIGFVAIVTLHLMILLVYKLSKHKDY----SQPAGAATAECSVSMRGGGDCGGNLNTS 381
            |   :..|:...|...|.:|::::.|..:|..:    |...|... :.:||:| ..:.|.:..:|
Zfish   411 FGVSVAVGLAVFACTFLLIMVVVINKCGQHSKFGIHRSSVLGTED-DLAVSLR-FMNFGASPPSS 473

  Fly   382 RETLGGNGNTNTLAKWGTIRSTATIHSNCVALTTVTNVSDAKGTKPNARLEKLEYPRGDIVYVRS 446
            .:              ||:.|..:        :.|.|.....|...:..:......|.|||....
Zfish   474 DD--------------GTLDSGLS--------SFVENPQYFCGIIKDKDMCVQHIKRKDIVLKWE 516

  Fly   447 LGQGAFGRVFQARAPGLVPDQEDLLVAVKMLKDDASDQMQMDFEREACLLAEFDHPNIVRLLGVC 511
            ||:||||:|:.|....|.||.:.:|||:|.|| .|::..:.||:|||.||....|.:|||..|||
Zfish   517 LGEGAFGKVYLAECANLCPDTDKMLVAIKTLK-IANESTRQDFQREAELLTVLQHEHIVRFYGVC 580

  Fly   512 ALGRPMCLLFEYMAPGDLSEFLRACSPYA----THQAPTQDRLQLNELHLLQMAANIAAGMLYLS 572
            |.|.|:.::||||..|||:.||||..|.|    ..:.|...:|.|.:  :|.:||.||:||:||:
Zfish   581 ADGEPLAMVFEYMRHGDLNRFLRAHGPDARILDEMKVPPMGQLTLPQ--MLHIAAQIASGMVYLA 643

  Fly   573 ERKFVHRDLATRNCLINEHMAVKIADFGLSHKIYLQDYYKGDENDFIPIRWMPLESILYNKFSLE 637
            ...||||||||||||:.|.:.|||.|||:|..||..|||:......:||||||.|||:|.||:.|
Zfish   644 SLHFVHRDLATRNCLVGEGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESIMYRKFTTE 708

  Fly   638 SDVWAYGICLWEVFSFALQPYFGLTHEEVIKYIKEGNVLGCPDNTPLSVYALMRRCWNRKPSER 701
            ||:|::|:.|||:|::..||::.|::.|.|:.|.:|..|..|...|..|:.||:.||.|:|.:|
Zfish   709 SDIWSFGVVLWEIFTYGKQPWYQLSNSEAIECITQGRELERPRTCPKEVHLLMQGCWQREPQQR 772

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NrkNP_477255.1 CRD_FZ 67..212 CDD:295308
KR 217..299 CDD:214527 11/47 (23%)
PTKc_Musk 435..713 CDD:133181 128/271 (47%)
Pkinase_Tyr 441..707 CDD:285015 126/265 (48%)
ntrk1NP_001288285.1 leucine-rich repeat 57..81 CDD:275378
LRR_8 80..139 CDD:290566
leucine-rich repeat 82..105 CDD:275378
leucine-rich repeat 106..128 CDD:275378
leucine-rich repeat 129..141 CDD:275378
TPKR_C2 141..183 CDD:293525
Ig 189..275 CDD:299845
IG_like 191..273 CDD:214653
Ig 293..373 CDD:299845 13/79 (16%)
PKc_like 505..784 CDD:304357 128/271 (47%)
TyrKc 511..782 CDD:197581 126/265 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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