DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nrk and ver-4

DIOPT Version :10

Sequence 1:NP_477255.1 Gene:Nrk / 36445 FlyBaseID:FBgn0020391 Length:724 Species:Drosophila melanogaster
Sequence 2:NP_509835.2 Gene:ver-4 / 186632 WormBaseID:WBGene00006897 Length:1216 Species:Caenorhabditis elegans


Alignment Length:466 Identity:131/466 - (28%)
Similarity:206/466 - (44%) Gaps:120/466 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 DYVDPNAVDLNTPIKMEKFFTPSMIFLLAGIGFVAIVTLHLMILLVYKLSKHKDYSQPAGAATAE 363
            ||::         :|:....:.|..:|.  |.|.|.|.:.:::.|::||...||..      .:|
 Worm   776 DYIE---------VKVAGASSSSFFWLF--ITFFAFVVVGIVVSLLWKLFGQKDLK------PSE 823

  Fly   364 CSVSMRGGGDCGGNLNTSRETLGGNGNTNTLAKWGTIRSTATIHSNCVALTTVTNVSDAKGTKP- 427
            .|::         ||..:         |:...|:                    .||:.....| 
 Worm   824 LSLN---------NLKRA---------TDEYQKY--------------------TVSEKINNLPV 850

  Fly   428 NARLEKLEYPRG------DIVYVRSLGQGAFGRV--------------FQARAPGLVPDQEDLLV 472
            ..|::.|.|...      ::..:.:||.|.||.|              |::|          |.|
 Worm   851 EERIDYLTYNEDYEIDLENLEILETLGSGQFGIVKKGYLNMASSKNFGFESR----------LSV 905

  Fly   473 AVKMLKDDASDQMQ-MDFEREACLLAEFDHPNIVRLLGVCALGRPMCLLF---EYMAPGDLSEFL 533
            |:|...|.::.::| |.||....:.|...|||::.|:|.......:..||   |.:..|:|.|||
 Worm   906 AIKSSTDSSNMELQKMFFEELKLMCAIPKHPNVLSLVGAVTKNMEIGELFIVTELIDGGNLREFL 970

  Fly   534 RACSPYATHQ---------------AP----TQDRLQLNELH------LLQMAANIAAGMLYLSE 573
            |.......::               .|    .:::|.::|.:      ||.:...||.||.:|:.
 Worm   971 RERRDVFANELVEKGYIFLTNVRENVPKREVEKEQLLIDEFNSLCTSDLLSIGLQIANGMDWLAN 1035

  Fly   574 RKFVHRDLATRNCLINEHMAVKIADFGLSHKIYLQDYYKGDE--NDFIPIRWMPLESILYNKFSL 636
            ...||||||.||.||::...::||||||:.|...:.||:..|  :..:|:||||||||....|:.
 Worm  1036 IPCVHRDLACRNVLISKTKIIRIADFGLAKKHTDKAYYRVRESLDTPLPVRWMPLESITDLTFTQ 1100

  Fly   637 ESDVWAYGICLWEVFSFALQPYFGLTHEEVIKYIKEGNVLGCPDNTPLSVYALMRRCWNRKPSER 701
            :||||:|||||:|:|:....||....:..:::|||.||:...|.|....||.:|:.||...|.:|
 Worm  1101 KSDVWSYGICLYEIFTLGGTPYPDCPNFSLVEYIKTGNINKRPSNCHKDVYKIMKMCWQASPDDR 1165

  Fly   702 PGFAEINHCIQ 712
            |.|||   ||:
 Worm  1166 PTFAE---CIK 1173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NrkNP_477255.1 CRD_FZ 67..212 CDD:470581
KR 217..299 CDD:214527 131/466 (28%)
PTKc_Musk 435..713 CDD:133181 106/329 (32%)
ver-4NP_509835.2 IG_like 611..692 CDD:214653
Ig strand B 615..619 CDD:409353
Ig strand C 629..633 CDD:409353
Ig strand E 658..662 CDD:409353
Ig strand F 672..677 CDD:409353
Ig 709..782 CDD:472250 2/14 (14%)
Ig strand B 717..721 CDD:409582
Ig strand C 730..734 CDD:409582
Ig strand F 762..767 CDD:409582
Ig strand G 775..778 CDD:409582 1/1 (100%)
STYKc 870..1175 CDD:214568 105/317 (33%)
Blue background indicates that the domain is not in the aligned region.

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