DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nrk and Ntrk3

DIOPT Version :10

Sequence 1:NP_477255.1 Gene:Nrk / 36445 FlyBaseID:FBgn0020391 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_036008659.1 Gene:Ntrk3 / 18213 MGIID:97385 Length:850 Species:Mus musculus


Alignment Length:597 Identity:188/597 - (31%)
Similarity:261/597 - (43%) Gaps:163/597 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 YNASMRRPNCSYIGLTELKESEVSYDC---------RNGN----GRFYMGTMNVSKSGIPCQRWD 244
            ||....|.: ..|.:...:|.|||..|         .|||    .:..:||.|.:.:|       
Mouse   337 YNGQPLRES-KIIHMDYYQEGEVSEGCLLFNKPTHYNNGNYTLIAKNALGTANQTING------- 393

  Fly   245 TQYPHKHFQPPLVFHQLLEGENYCRNAGGEEPHPWCYTVDESVRWQHCDIPMCPDYVD-PNAVDL 308
                  ||.                    :||.|      ||.           |:.| .:....
Mouse   394 ------HFL--------------------KEPFP------EST-----------DFFDFESDASP 415

  Fly   309 NTPIKM-----EKFFTPSMIFLLAGIGFVAIVTLHLMILLVYKLSKHKDYSQPAGAATAECSVSM 368
            ..||.:     |..|..|:...||....|.:|.|.:||                           
Mouse   416 TPPITVTHKPEEDTFGVSIAVGLAAFACVLLVVLFIMI--------------------------- 453

  Fly   369 RGGGDCGGNLNTSRETLGGNGNTNTLAKWGTIRSTATIHSNCVALTTVTNVSDAKGT-------- 425
                    |....|...|..|....::  |...|.:.:|.....:||.:::.....|        
Mouse   454 --------NKYGRRSKFGMKGPVAVIS--GEEDSASPLHHINHGITTPSSLDAGPDTVVIGMTRI 508

  Fly   426 ----------------KPNARLEKLEYPRGDIVYVRSLGQGAFGRVFQARAPGLVPDQEDLLVAV 474
                            ||:..::.::  |.|||..|.||:||||:||.|....|.|.::.:||||
Mouse   509 PVIENPQYFRQGHNCHKPDTYVQHIK--RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAV 571

  Fly   475 KMLKDDASDQMQMDFEREACLLAEFDHPNIVRLLGVCALGRPMCLLFEYMAPGDLSEFLRACSPY 539
            |.|||... ..:.||:|||.||....|.:||:..|||..|.|:.::||||..|||::||||..|.
Mouse   572 KALKDPTL-AARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPD 635

  Fly   540 ATHQAPTQDRLQLNELHLLQM---AANIAAGMLYLSERKFVHRDLATRNCLINEHMAVKIADFGL 601
            |......|.|....||.|.||   |:.||:||:||:.:.||||||||||||:..::.|||.|||:
Mouse   636 AMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGM 700

  Fly   602 SHKIYLQDYY------KGDEN-------------------DFIPIRWMPLESILYNKFSLESDVW 641
            |..:|..|||      ||..|                   ..:||||||.|||:|.||:.|||||
Mouse   701 SRDVYSTDYYREGPCQKGPFNVSWQQQRLAASAASTVGGHTMLPIRWMPPESIMYRKFTTESDVW 765

  Fly   642 AYGICLWEVFSFALQPYFGLTHEEVIKYIKEGNVLGCPDNTPLSVYALMRRCWNRKPSERPGFAE 706
            ::|:.|||:|::..||:|.|::.|||:.|.:|.||..|...|..||.:|..||.|:|.:|....|
Mouse   766 SFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVCPKEVYDVMLGCWQREPQQRLNIKE 830

  Fly   707 INHCIQHSIAES 718
            | :.|.|::.::
Mouse   831 I-YKILHALGKA 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NrkNP_477255.1 CRD_FZ 67..212 CDD:470581 4/18 (22%)
KR 217..299 CDD:214527 15/94 (16%)
PTKc_Musk 435..713 CDD:133181 138/305 (45%)
Ntrk3XP_036008659.1 LRR_8 103..160 CDD:404697
leucine-rich repeat 105..128 CDD:275378
leucine-rich repeat 129..151 CDD:275378
leucine-rich repeat 152..164 CDD:275378
LRRCT_2 163..208 CDD:465313
ig 214..299 CDD:395002
Ig strand B 227..231 CDD:409353
Ig strand C 240..244 CDD:409353
Ig strand E 266..270 CDD:409353
Ig strand F 281..286 CDD:409353
Ig strand G 294..297 CDD:409353
IgI_TrKABC_d5 304..396 CDD:409360 17/72 (24%)
Ig strand A 305..311 CDD:409360
Ig strand A' 313..316 CDD:409360
Ig strand B 319..327 CDD:409360
Ig strand C 330..337 CDD:409360 188/597 (31%)
Ig strand C' 340..343 CDD:409360 0/2 (0%)
Ig strand D 348..354 CDD:409360 1/5 (20%)
Ig strand E 358..366 CDD:409360 3/7 (43%)
Ig strand F 374..382 CDD:409360 2/7 (29%)
Ig strand G 385..393 CDD:409360 3/7 (43%)
PTKc_TrkC 532..843 CDD:270676 139/314 (44%)
Blue background indicates that the domain is not in the aligned region.

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