DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nrk and Hgf

DIOPT Version :9

Sequence 1:NP_477255.1 Gene:Nrk / 36445 FlyBaseID:FBgn0020391 Length:724 Species:Drosophila melanogaster
Sequence 2:NP_001276387.1 Gene:Hgf / 15234 MGIID:96079 Length:728 Species:Mus musculus


Alignment Length:256 Identity:73/256 - (28%)
Similarity:101/256 - (39%) Gaps:62/256 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 REREENGYCAPYSGKVCKEYLTGQVWYSLEDPTGGWKNEQVTTALWDELISDLTGLCREAAEKML 126
            ::.:|| ||....|:      .|..|....:|...::            :.|:. .|.| .|.|.
Mouse   171 KDLQEN-YCRNPRGE------EGGPWCFTSNPEVRYE------------VCDIP-QCSE-VECMT 214

  Fly   127 C---AYAFPNCHMEGGRAVKAPLCFEDCQATHLQFCYNDWVLIEEKKERNMFIKSR--------G 180
            |   :|..|..|.|.|:.         ||.         |  .::...|:.|:..|        .
Mouse   215 CNGESYRGPMDHTESGKT---------CQR---------W--DQQTPHRHKFLPERYPDKGFDDN 259

  Fly   181 HFRLPNCSSLPH-YNASMRRP-------NCSYIGLTELKESEVSYDCRNGNGRFYMGTMNVSKSG 237
            :.|.|:....|. |......|       .|::..:.|......:.:|..|.|..|.||.|...:|
Mouse   260 YCRNPDGKPRPWCYTLDPDTPWEYCAIKTCAHSAVNETDVPMETTECIQGQGEGYRGTSNTIWNG 324

  Fly   238 IPCQRWDTQYPHKHFQPPLVFHQLLEGENYCRNAGGEEPHPWCYTVDESVRWQHC-DIPMC 297
            |||||||:||||||...|..|......||||||..|.| .|||:|.|.::|..:| .||.|
Mouse   325 IPCQRWDSQYPHKHDITPENFKCKDLRENYCRNPDGAE-SPWCFTTDPNIRVGYCSQIPKC 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NrkNP_477255.1 CRD_FZ 67..212 CDD:295308 31/163 (19%)
KR 217..299 CDD:214527 41/82 (50%)
PTKc_Musk 435..713 CDD:133181
Pkinase_Tyr 441..707 CDD:285015
HgfNP_001276387.1 PAN_APPLE 41..123 CDD:238074
KR 127..209 CDD:214527 10/57 (18%)
KR 211..289 CDD:214527 19/97 (20%)
KR 305..385 CDD:214527 41/81 (51%)
KR 389..471 CDD:238056
Tryp_SPc 495..719 CDD:214473
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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