DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cap-G and Ncapg

DIOPT Version :9

Sequence 1:NP_995827.2 Gene:Cap-G / 36440 FlyBaseID:FBgn0259876 Length:1351 Species:Drosophila melanogaster
Sequence 2:XP_008768445.2 Gene:Ncapg / 305392 RGDID:1562646 Length:1003 Species:Rattus norvegicus


Alignment Length:1099 Identity:257/1099 - (23%)
Similarity:468/1099 - (42%) Gaps:203/1099 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 QAELKESLHKRYSKEMQQLYAKMGHESFRKAFINVLKAVLGAEEGNENANMALNFCATFVTS--- 122
            ||:|..:|.:.|.       |.....:|::.|::.||..:...:........::|.|.||||   
  Rat    24 QAKLVVALSRTYG-------AVNDKTAFQEEFVHYLKYAMVVHKREPAVERVMDFTAKFVTSFHQ 81

  Fly   123 SDSDGTEP-----MLAETFHWLLTTYSSNPH-IRYRICYFVNLILKELGPNAALDDHQCDDILEA 181
            ||.:..|.     :|...|.:||.::.:|.. :|:|.|..:|.:|..:..||.:||...|.|.||
  Rat    82 SDQEEEEEEKDGGILNYLFTFLLKSHEANSSAVRFRACQLINKLLGNMPENAQIDDDLFDKINEA 146

  Fly   182 MLDRVKDVSASVRKQAVLAMQRLQNPDNPSDVVVGAYMYHLTSDPSPNVRQCIITCMGRNYITIP 246
            ||.|:||...:||.|||||:.|||:|.:....||.||:..:.:|.:|.||:.:::|:..:..|:|
  Rat   147 MLIRLKDKIPNVRIQAVLALSRLQDPKDHDCPVVDAYVTLIENDSNPEVRRAVLSCIAPSAKTLP 211

  Fly   247 HILERLWDVDEKVRRHTY------VNMCNYPVRSYKVAQRLTLLEQGLNDTSATVRKTVINFMLK 305
            .|:||..|:.:.||:..|      |:|     |:..:|||:.||:|||:|.|..|::.|...:|:
  Rat   212 KIVERTKDIKDIVRKLAYQVLAEKVHM-----RALSIAQRVLLLQQGLSDRSDAVKQAVQKHLLQ 271

  Fly   306 TWIESYQQNYVALIAALKLDSNEEELLRFRRVAKQMLRVIFQQTDIKQLIDQLPLSEDCELHRCI 370
            .|:...:.|.:.|:..|.::::.:       ||..:|..:|..:.:.:|:.   :.:|.:..:.|
  Rat   272 GWLRFTEGNILELLHRLDVENSSD-------VAVSVLHSLFSMSPLSELVG---ICKDDDGRKLI 326

  Fly   371 PHDSVTVELLLYWQCLSEYLETEAPE----IESLLPELSVFCTYMDKFCQ-------FQKPDMDK 424
            |.:::|.|:.|||..|.|||:::..|    :|.:|||.:|:..|:..:.|       .||.|...
  Rat   327 PVETLTPEIALYWCTLCEYLKSKGDEGEEFLEQILPEPAVYAEYLVSYIQGFPVVNEEQKSDFTY 391

  Fly   425 FAQVEFQNML-LSLVEILETYDLGDEIGRGNMRLLITNLLKDCLLDHKIVRVLVRCMEQLITDTN 488
            ...:..:..: ..|:.|:::.|..:|.||..:..::...|........:...:|..:..::||.:
  Rat   392 IGNLMTREFIGQQLILIIKSLDTSEEGGRKRLLAILQETLTLPTTPISLFSFIVERLLHIVTDDS 456

  Fly   489 DRIQYFIEIIYELCELNTKQNDLIHDRSLINKLLDDLDTPLK-MKISSLKVKILELEELEGNYVR 552
            .|||...|||.|:            ...::...:|..||..| :|::.:|||::|.:|...|.:.
  Rat   457 KRIQIVTEIISEI------------RAPIVTVHVDPSDTRKKELKMAEIKVKLIEAKEALENCIA 509

  Fly   553 QREYIRAQSVNDE---------KIAVTEEYTELIRPLLEKHGV----------IEMPTRPKLSKQ 598
            .:::.:|..:.:|         .:....|..|:.....||:.|          .|:..|..:|..
  Rat   510 VQDFDQASKLKEEIKTLEDARINLLKETEQLEIKEVQTEKNDVETLQKCFILCYELLKRMSISTG 574

  Fly   599 -ERVLKGLYISYYMTASPHVHKLTPSLCQLYKDFICRYLPCAEVDIFEWSIKCGTTFSIFYEAYS 662
             ...:.|:..|..:.....||.:..:|..|     |  |.|           ||.....|...:.
  Rat   575 IGATMNGIIESLILPGIISVHPIVRNLAVL-----C--LGC-----------CGLQDQNFASKHF 621

  Fly   663 REVFEVVVVQFCKNNNVRLCEASANCILELLDRYGVDYF-----NDLNQTGGSLSKTKRRQLYTM 722
                 ::.:|..:.::|.:..::...|.:.|..:|::.|     ..::..|..||.         
  Rat   622 -----ILFLQVLQIDDVTIKVSALKAIFDQLMMFGIEPFKAQKVKAVHCEGAELSS--------- 672

  Fly   723 QELYDDDDGSQSQNNEQNSDILVVLGHYLE-RVQHRGVGMAIVRGLCRLVLRG-HVDDRTDVLEL 785
                .|:....:::......:|.:|..:|: .|.....|.|  .||.:|:..| .|..|  :|..
  Rat   673 ----PDEQEEDAEDRATAKSVLKLLSDFLDSEVSELRTGAA--EGLAKLMFSGLLVSSR--ILSR 729

  Fly   786 LLKRYFNPNTEPII--NQVLGLFFEEL---RRLNKHSLLQPCFLPTVWT---CNYDSPLHGVQPE 842
            |:..::||.||..:  ...||:||...   .|.|: ...:..|:||:.|   ....|||..|...
  Rat   730 LILLWYNPVTEEDVRLRHCLGVFFPMFAYASRTNQ-ECFEEAFIPTIQTLANAPASSPLAEVDVT 793

  Fly   843 HLTKFFLEMTVQEMSTPQT---------NIHNKIAISFLQYIQNYFTERKDMCRLLAKELTNLSI 898
            ::.:..:::|......||.         .:|:.:||.....|.......::.....|..|..||.
  Rat   794 NVAELLVDLTRPSGLNPQAKNSQDYQALTVHDNLAIKICNEILTNPCSPENRVYTKALSLVELSS 858

  Fly   899 NVLNGPEVKAELLALAENLIQSELDPRMIKCIQNFKLVVNGSFNPPPRRNPDEGESDEEYETATV 963
            :|..      :||.|.:.:::...|...::.::..|:.:              |:..:|::...|
  Rat   859 SVTK------DLLLLLDEILEQVTDRTCLRALEKIKIQL--------------GKGSKEFDQCVV 903

  Fly   964 TTAESETAVPAQSQPPVTEESPNDVTQSAAITAVDATETPKAAAPPAPVPEPIVTTFGKDNIVGI 1028
            |...:.|....|.:......:.|          |..|:..|             :|.||.|    
  Rat   904 TEDANTTTKVLQDENEYRTPARN----------VKGTQASK-------------STQGKTN---- 941

  Fly  1029 RHLRRSMAISHSDAESLLGPQSPNPEESTESEAVETSKQNLRQPQMRRRLEMAIARSSK 1087
            |..|::...|.::...    |:..|:  :||:....|:..:|.|   ||.:.|..:.||
  Rat   942 RGRRKAPVSSKTNRRC----QTAGPD--SESDHEPPSEMRMRLP---RRAKTAALQKSK 991

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cap-GNP_995827.2 YCG1 49..>526 CDD:227543 137/491 (28%)
HEAT repeat 95..124 CDD:293787 8/31 (26%)
HEAT repeat 134..163 CDD:293787 9/29 (31%)
HEAT repeat 176..203 CDD:293787 16/26 (62%)
HEAT repeat 214..240 CDD:293787 9/25 (36%)
HEAT repeat 243..270 CDD:293787 11/32 (34%)
Cnd3 603..902 CDD:289489 66/322 (20%)
NcapgXP_008768445.2 YCG1 9..855 CDD:227543 220/905 (24%)
HEAT repeat 99..128 CDD:293787 9/28 (32%)
HEAT repeat 138..172 CDD:293787 19/33 (58%)
HEAT repeat 181..204 CDD:293787 7/22 (32%)
HEAT repeat 206..234 CDD:293787 9/27 (33%)
Cnd3 557..856 CDD:403809 66/339 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354269
Domainoid 1 1.000 195 1.000 Domainoid score I3059
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H44071
Inparanoid 1 1.050 218 1.000 Inparanoid score I3496
OMA 1 1.010 - - QHG52012
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005734
OrthoInspector 1 1.000 - - oto95628
orthoMCL 1 0.900 - - OOG6_103650
Panther 1 1.100 - - LDO PTHR14418
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4725
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.900

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