DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13326 and arm

DIOPT Version :9

Sequence 1:NP_610838.1 Gene:CG13326 / 36439 FlyBaseID:FBgn0033794 Length:867 Species:Drosophila melanogaster
Sequence 2:NP_001259149.1 Gene:arm / 31151 FlyBaseID:FBgn0000117 Length:843 Species:Drosophila melanogaster


Alignment Length:603 Identity:109/603 - (18%)
Similarity:196/603 - (32%) Gaps:178/603 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   272 PEAADV-IEVLATALRSEKMT---KLFFEQNLFDQVVEQVRNHMDLMPLEMRC--TIISIFAETA 330
            ||..:. ||:.:|....::.|   :|.....:....|..:.|:.|...|..|.  .:|.:..:..
  Fly   108 PETLEEGIEIPSTQFDPQQPTAVQRLSEPSQMLKHAVVNLINYQDDAELATRAIPELIKLLNDED 172

  Fly   331 Q--YEQFLPRMHKAEIADMFLTCLMQNKPAPAAYVIQG----------------LHRMSHHPEAL 377
            |  ..|....:|:....:.....:| |.|...|.:::.                ||.:|||.:.|
  Fly   173 QVVVSQAAMMVHQLSKKEASRHAIM-NSPQMVAALVRAISNSNDLESTKAAVGTLHNLSHHRQGL 236

  Fly   378 RRIVAAYQEGAIRKLVAILMSPDVAI----------KAREQAGEFLSRLLVAAFRETAAQLQEQD 432
               :|.::.|.|..||.:|.||..::          ....|.|..::..|....::....||..:
  Fly   237 ---LAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQDGSKMAVRLAGGLQKMVTLLQRNN 298

  Fly   433 I---AVVLTA--------------VIAQGQPT------LSIDLILLLLT---IIESLAQKEEYRT 471
            :   |:|...              ::|.|.|.      .|.|...||.|   :::.|:.....:.
  Fly   299 VKFLAIVTDCLQILAYGNQESKLIILASGGPNELVRIMRSYDYEKLLWTTSRVLKVLSVCSSNKP 363

  Fly   472 IL---GEYSSLTEQLAQLLMRSFAHSILVNNIFRCLCTL--IDEAPVR----ETLLANYI----- 522
            .:   |...:|...|..:..|      ||.|   ||.||  :.:|..:    |.||.:.:     
  Fly   364 AIVDAGGMQALAMHLGNMSPR------LVQN---CLWTLRNLSDAATKVEGLEALLQSLVQVLGS 419

  Fly   523 --VSSMKRALKSLSNLVKTSVTN--FILQTTRFNEFIDAYIDRGIMEVLLDFQKHAFCI------ 577
              |:.:..|...||||...:..|  .:.|....:..:...|:.|..|   :..:.|.|.      
  Fly   420 TDVNVVTCAAGILSNLTCNNQRNKATVCQVGGVDALVRTIINAGDRE---EITEPAVCALRHLTS 481

  Fly   578 ----------------------------STWGPAIESI------LSKCPTMKFAIRN-------- 600
                                        |.| |.|:::      |:.||.....:|.        
  Fly   482 RHVDSELAQNAVRLNYGLSVIVKLLHPPSRW-PLIKAVIGLIRNLALCPANHAPLREHGAIHHLV 545

  Fly   601 ---CLTFTD--------ITAGKDFYVSRRKFEDFRKFQDILRNDCSPLDAVLVMNFDRPKPNQND 654
               ...|.|        .|.|..   ....:.|..:.::|:......|..:...:.:|....|..
  Fly   546 RLLMRAFQDTERQRSSIATTGSQ---QPSAYADGVRMEEIVEGTVGALHILARESHNRALIRQQS 607

  Fly   655 VIAVPLRCL------------STITDLPGD-QGWGYCKRPGDNN-LPQYLEALNQTLAMHGLV-- 703
            ||.:.:|.|            ..:.:|..| :|....::.|... |...|.:.|:.:|.:...  
  Fly   608 VIPIFVRLLFNEIENIQRVAAGVLCELAADKEGAEIIEQEGATGPLTDLLHSRNEGVATYAAAVL 672

  Fly   704 -----ENPERVRRTIDFE 716
                 :.|:..::.:..|
  Fly   673 FRMSEDKPQDYKKRLSIE 690

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13326NP_610838.1 EDR1 <759..799 CDD:291079
armNP_001259149.1 Adaptin_N <150..>314 CDD:331138 32/167 (19%)
armadillo repeat 161..186 CDD:293788 4/24 (17%)
armadillo repeat 193..231 CDD:293788 6/38 (16%)
armadillo repeat 238..270 CDD:293788 8/31 (26%)
armadillo repeat 278..314 CDD:293788 5/35 (14%)
armadillo repeat 320..355 CDD:293788 8/34 (24%)
Arm 361..398 CDD:278915 11/45 (24%)
armadillo repeat 362..397 CDD:293788 11/43 (26%)
armadillo repeat 410..435 CDD:293788 5/24 (21%)
Arm 439..481 CDD:278915 7/44 (16%)
armadillo repeat 443..481 CDD:293788 6/40 (15%)
armadillo repeat 490..525 CDD:293788 4/35 (11%)
Arm 597..636 CDD:278915 7/38 (18%)
armadillo repeat 600..636 CDD:293788 7/35 (20%)
armadillo repeat 641..675 CDD:293788 5/33 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2332
SonicParanoid 00.000 Not matched by this tool.
21.940

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