DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(z)2 and pcgf2

DIOPT Version :9

Sequence 1:NP_001260933.1 Gene:Su(z)2 / 36432 FlyBaseID:FBgn0265623 Length:1396 Species:Drosophila melanogaster
Sequence 2:NP_001025573.1 Gene:pcgf2 / 594961 XenbaseID:XB-GENE-1013680 Length:317 Species:Xenopus tropicalis


Alignment Length:313 Identity:82/313 - (26%)
Similarity:139/313 - (44%) Gaps:60/313 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 ITCRLCRGYMIDPTTVDYCYHTYCRSCILKHLLRAVYCPECKASGGKEINELNLKSDDTLRSLIY 97
            :.|.||.||.||..|:..|.|::|::|||::|....:||.|.:...|....|:::||.||:.::|
 Frog    16 LMCALCGGYFIDAATIVECLHSFCKTCILRYLEAHKFCPMCDSQVHKGRPLLSIRSDKTLQDIVY 80

  Fly    98 KLVPGLYQRECKELADFKEQHDLVDEQTTDE-----------PEFFTTTELISLSLEYHPAMLHQ 151
            ||||||::.|.|...||...:....:.::.|           |  ....|.||||:::     .:
 Frog    81 KLVPGLFRDEMKRRRDFYASYSRSKDSSSAEQGQKVLEAGEAP--VQEEENISLSIQF-----SE 138

  Fly   152 CGPGEVPPTI------------YLQCAAGLPVELLKRFLCSKYNIETDNGLVEVEVTYKDEVLPT 204
            ....|:...:            :|:|.|.:.:..|.:||.:|.::.:.   .:||:.|::|.|..
 Frog   139 DARDEIQDLVDSEDLEKRNSLRFLRCPAAMTITHLAKFLRNKMDVPSK---YKVEILYEEEPLKD 200

  Fly   205 NFTLMDVAYCYNWSRESPMAFCYRILLYDNEQTKNDENNLSRINQDIEPE-HSVRRSKSAKSVTF 268
            .:||||:||.|.|.|..|:...||                      ::|. ..:|.|:....:.|
 Frog   201 YYTLMDIAYIYPWGRTGPLPLKYR----------------------VQPTCKRLRFSRPRSLLDF 243

  Fly   269 AEDLESEIDSGSPRSKVRCKTPPK----VSPSSKNKRLTSSKREAEPESPVSN 317
            .....||.:|.|.::......|..    .||::..:...:...|..|.|.:.|
 Frog   244 NRGTTSEGESTSDKASSPAPVPSTSSSLPSPATPCQGSPNPNTELPPSSVLQN 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(z)2NP_001260933.1 zf-C3HC4 35..73 CDD:278524 17/37 (46%)
RAWUL 143..228 CDD:292824 23/96 (24%)
pcgf2NP_001025573.1 RAD18 9..>166 CDD:333230 45/156 (29%)
RING-HC_PCGF4 12..65 CDD:319650 19/48 (40%)
RING-HC finger (C3HC4-type) 18..56 CDD:319650 17/37 (46%)
RAWUL 160..224 CDD:318447 22/66 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000290
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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