DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(z)2 and Pcgf6

DIOPT Version :10

Sequence 1:NP_001260933.1 Gene:Su(z)2 / 36432 FlyBaseID:FBgn0265623 Length:1396 Species:Drosophila melanogaster
Sequence 2:XP_008758660.1 Gene:Pcgf6 / 309457 RGDID:1306904 Length:365 Species:Rattus norvegicus


Alignment Length:88 Identity:34/88 - (38%)
Similarity:55/88 - (62%) Gaps:0/88 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 ITCRLCRGYMIDPTTVDYCYHTYCRSCILKHLLRAVYCPECKASGGKEINELNLKSDDTLRSLIY 97
            |.|.:|:||:||.||:..|.||:|:|||::|...:..||:|.....:.....|::.|..|:.::|
  Rat   133 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQDIVY 197

  Fly    98 KLVPGLYQRECKELADFKEQHDL 120
            |||..|.:||.|::.||.::..|
  Rat   198 KLVVNLEEREKKQMHDFYKERGL 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(z)2NP_001260933.1 RING-HC_PCGF5 23..117 CDD:438395 33/83 (40%)
RAWUL_PCGF2_like 137..228 CDD:340602
Pcgf6XP_008758660.1 RING-HC_PCGF6 126..184 CDD:438396 20/50 (40%)
COG5222 <135..258 CDD:227547 33/86 (38%)
RAWUL_PCGF6 261..356 CDD:340605
Blue background indicates that the domain is not in the aligned region.

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