DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Psc and PCGF6

DIOPT Version :9

Sequence 1:NP_001286368.1 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_001011663.1 Gene:PCGF6 / 84108 HGNCID:21156 Length:350 Species:Homo sapiens


Alignment Length:373 Identity:107/373 - (28%)
Similarity:158/373 - (42%) Gaps:58/373 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 ENTLATTANAALAAAT-----------TTTTTATPALATGKAAKTILENGIKKESTPPAVESVEA 181
            |.....||.:..||.|           .:....|||.|.|             |..|..:....|
Human     2 EGVAVVTAGSVGAAKTEGAAALPPPPPVSPPALTPAPAAG-------------EEGPAPLSETGA 53

  Fly   182 SSSSSSSSSSSSSSSSSWPTTRRATSEDASSNGGASADEEKSEEDPTAAVAASSTATTTSDLATT 246
            ...|.|.........|......|...||.........:||:.||:...:..:........| :..
Human    54 PGCSGSRPPELEPERSLGRFRGRFEDEDEELEEEEELEEEEEEEEEDMSHFSLRLEGGRQD-SED 117

  Fly   247 SRPRPVLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLRKERFCPRCEMVINNAKP- 310
            ...|.:.|:.:.|:|:|.:|:||||:||||.||||:||.||::.|......||:|.:|::..:| 
Human   118 EEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 182

  Fly   311 -NIKSDTTLQAIVYKLVPGLYERELMRKRAFYKDR----PEEAA-LATPEQRGDDTEHL--IF-- 365
             ||:.|..||.||||||..|.|||..:...|||:|    |:.|. ...|..:|...:.|  :|  
Human   183 YNIRLDRQLQDIVYKLVINLEEREKKQMHDFYKERGLEVPKPAVPQPVPSSKGRSKKVLESVFRI 247

  Fly   366 SPSDDMSLSLEYAELGELKTDSEPELVDTLRPRYLQCPAMCRVSHLKKFVYDKFEIDAQRFSIDI 430
            .|..||||.||:....|.....:|     |..::::......:.|::||:..|..:| ....:||
Human   248 PPELDMSLLLEFIGANEGTGHFKP-----LEKKFVRVSGEATIGHVEKFLRRKMGLD-PACQVDI 306

  Fly   431 MYKVKTIVLLDYYTLMDIAYIYTWKR---DAPMR-----FYYRVYESP 470
            :  ....:|..|.||.:|      :|   ||.|:     .:|.:..||
Human   307 I--CGDHLLEQYQTLREI------RRAIGDAAMQDGLLVLHYGLVVSP 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_001286368.1 zf-C3HC4 263..301 CDD:278524 21/37 (57%)
RAWUL 384..465 CDD:292824 18/88 (20%)
PCGF6NP_001011663.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..115 25/126 (20%)
zf-C3HC4 134..172 CDD:278524 21/37 (57%)
RAWUL 270..>319 CDD:292824 11/56 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165157902
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2660
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1203951at2759
OrthoFinder 1 1.000 - - FOG0000290
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.750

Return to query results.
Submit another query.