DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psc and AT5G13250

DIOPT Version :10

Sequence 1:NP_523725.2 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_196829.2 Gene:AT5G13250 / 831165 AraportID:AT5G13250 Length:387 Species:Arabidopsis thaliana


Alignment Length:210 Identity:44/210 - (20%)
Similarity:64/210 - (30%) Gaps:81/210 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly  1070 SATQSGGNNGIVNNNIYMPNEDAPEKQQVKVKSLLNSCNINIPSSLSITISRDNGDSSSPNNGQH 1134
            |:.:...:|...||||...|.:..|..:::.:..|.             :|..:.:...|:....
plant    88 SSKEDDHDNNSNNNNINNNNNNEAEDHEMRQQGWLR-------------LSLGHEEDVKPDLDHR 139

  Fly  1135 PKHK----------------SPVNNYIEIVKLP----------------------DQPQDQVQAA 1161
            .:|:                |..:|..|.|.||                      .:|||.:   
plant   140 QQHQTDPTARRDSFLELNLSSGGSNREEEVGLPLSSLFHHQHQAGGMMINPLMFHTRPQDMI--- 201

  Fly  1162 KEAQKRQSPPAAVPGHLAAKLPPPPPSKAIPSPQHLVSRMTP------------PQLPKVATPP- 1213
                   .|.||.    |.:.|..|.:...||.....|.|.|            |||.....|. 
plant   202 -------GPWAAA----AFRTPFVPQNLTQPSSSSSGSLMMPLMGQYFGRSSFQPQLIGNDNPDG 255

  Fly  1214 ---PPSSPRVITPPK 1225
               |.||.|||.||:
plant   256 VAGPSSSLRVIDPPR 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_523725.2 RING_Ubox 254..341 CDD:473075
RAWUL_PCGF2_like 371..465 CDD:340602
PHA03247 <1160..1381 CDD:223021 23/82 (28%)
AT5G13250NP_196829.2 RAWUL_DRIP_like 275..383 CDD:340607
Blue background indicates that the domain is not in the aligned region.

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