DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Psc and AT3G23060

DIOPT Version :9

Sequence 1:NP_001286368.1 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_188946.2 Gene:AT3G23060 / 821880 AraportID:AT3G23060 Length:480 Species:Arabidopsis thaliana


Alignment Length:576 Identity:114/576 - (19%)
Similarity:180/576 - (31%) Gaps:227/576 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 VLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLRKERF--CPRCEMVINNAKPNIKS 314
            ||...|.|.:.|.:|.....:||||.||||:||.||:.|....||.  ||.|.:.:         
plant     5 VLSKEVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNL--------- 60

  Fly   315 DTTLQAIVYKLVPGLYERELMRKRAFYKDRPEEAALATPEQRGDDTEHLIFSPSDDMSLSLEYAE 379
                         |::..|.:|                               ||          
plant    61 -------------GVFPLEKLR-------------------------------SD---------- 71

  Fly   380 LGELKTDSEPELVDTLRPRYLQCPAMCRVSHLKKFVYDKFEIDAQRFSIDIMYKVKTIVLLDYYT 444
                                      |                                      
plant    72 --------------------------C-------------------------------------- 72

  Fly   445 LMDIAYIYTWKRDAPMRFYYRVYESPQPLVKPAPRRV-LPLKLEKQERENQEQQLAVEVASSKVE 508
                    || :|..::.|..:.||   |.|..|:.| ..:|..|::|::   :.::.|:||:|.
plant    73 --------TW-QDLKLKIYRAMMES---LKKAGPKTVAASVKSSKKKRKS---RTSLRVSSSRVS 122

  Fly   509 PVSLPEDQKAEASIKVEE-----QESTREIVKEVIKDVAATPPTETLKLVINRNMLDKREKSHSP 568
              |.|:.....|::.||.     :|..||.|..:         ..|.|.:|.   ..||.:..| 
plant   123 --SSPDTPLEPANVVVEPPNVVVEEKHRETVLAL---------QSTRKPIIT---FQKRGRKAS- 172

  Fly   569 QMSSKSSSKSSPCTPVSSPSEPNIKLKIDLSKQNSVTIIDMSD--------PERREIVKPL---- 621
             :..|..||..|..|   |.||.||...||:.:.....:|.::        |:.:::.||:    
plant   173 -LPKKIDSKPEPELP---PKEPKIKNLFDLNNEPEDNGLDEAEGSTFQEVVPKEKDLCKPIFSLS 233

  Fly   622 -------------KPEKESRSKKKDKDGSPKSSSSSSSSSSGERKRKSPSPLTVPPLTIRTER-- 671
                         :||..|     |.|.........:........::.|..:....|.|.::|  
plant   234 VTLNINDTPPDIVEPEISS-----DDDTEESVEPIQNKCVVNRETKEVPVQVNQNSLLISSDRDR 293

  Fly   672 ------IMSPSGVSTLSPRVTSGAFSEDPKSEFLKSFALKPIKVKVESPERTLNNRA--ITPPSP 728
                  .:..:|.:|...|...|      |....||::|:|     ....||:|..|  .||.:|
plant   294 EDNSGQKLKTNGAATSRSRKKKG------KKPVEKSYSLRP-----RIGRRTVNPAAGTTTPEAP 347

  Fly   729 -SVQQSASPKSKGNNLDDSILMKPPS------CMPPKSIASSKRKSKEPVKAVSKK 777
             ||::....:...||......:||..      .:||.:....:.|......:..||
plant   348 VSVEEEMKVEEGRNNNPVWFSLKPSKTQNIEMLLPPITACCIRVKDSNMTVSYLKK 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_001286368.1 zf-C3HC4 263..301 CDD:278524 19/39 (49%)
RAWUL 384..465 CDD:292824 5/80 (6%)
AT3G23060NP_188946.2 RING_Ubox 14..57 CDD:418438 19/42 (45%)
RING-HC finger (C3HC4-type) 16..56 CDD:319361 19/39 (49%)
RAWUL_DRIP_like 364..467 CDD:340607 7/40 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 52 1.000 Domainoid score I4257
eggNOG 1 0.900 - - E1_KOG2660
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000290
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.770

Return to query results.
Submit another query.