DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psc and AT3G23060

DIOPT Version :10

Sequence 1:NP_523725.2 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_188946.2 Gene:AT3G23060 / 821880 AraportID:AT3G23060 Length:480 Species:Arabidopsis thaliana


Alignment Length:576 Identity:114/576 - (19%)
Similarity:180/576 - (31%) Gaps:227/576 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 VLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLRKERF--CPRCEMVINNAKPNIKS 314
            ||...|.|.:.|.:|.....:||||.||||:||.||:.|....||.  ||.|.:.:         
plant     5 VLSKEVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNL--------- 60

  Fly   315 DTTLQAIVYKLVPGLYERELMRKRAFYKDRPEEAALATPEQRGDDTEHLIFSPSDDMSLSLEYAE 379
                         |::..|.:|                               ||          
plant    61 -------------GVFPLEKLR-------------------------------SD---------- 71

  Fly   380 LGELKTDSEPELVDTLRPRYLQCPAMCRVSHLKKFVYDKFEIDAQRFSIDIMYKVKTIVLLDYYT 444
                                      |                                      
plant    72 --------------------------C-------------------------------------- 72

  Fly   445 LMDIAYIYTWKRDAPMRFYYRVYESPQPLVKPAPRRV-LPLKLEKQERENQEQQLAVEVASSKVE 508
                    || :|..::.|..:.||   |.|..|:.| ..:|..|::|::   :.::.|:||:|.
plant    73 --------TW-QDLKLKIYRAMMES---LKKAGPKTVAASVKSSKKKRKS---RTSLRVSSSRVS 122

  Fly   509 PVSLPEDQKAEASIKVEE-----QESTREIVKEVIKDVAATPPTETLKLVINRNMLDKREKSHSP 568
              |.|:.....|::.||.     :|..||.|..:         ..|.|.:|.   ..||.:..| 
plant   123 --SSPDTPLEPANVVVEPPNVVVEEKHRETVLAL---------QSTRKPIIT---FQKRGRKAS- 172

  Fly   569 QMSSKSSSKSSPCTPVSSPSEPNIKLKIDLSKQNSVTIIDMSD--------PERREIVKPL---- 621
             :..|..||..|..|   |.||.||...||:.:.....:|.::        |:.:::.||:    
plant   173 -LPKKIDSKPEPELP---PKEPKIKNLFDLNNEPEDNGLDEAEGSTFQEVVPKEKDLCKPIFSLS 233

  Fly   622 -------------KPEKESRSKKKDKDGSPKSSSSSSSSSSGERKRKSPSPLTVPPLTIRTER-- 671
                         :||..|     |.|.........:........::.|..:....|.|.::|  
plant   234 VTLNINDTPPDIVEPEISS-----DDDTEESVEPIQNKCVVNRETKEVPVQVNQNSLLISSDRDR 293

  Fly   672 ------IMSPSGVSTLSPRVTSGAFSEDPKSEFLKSFALKPIKVKVESPERTLNNRA--ITPPSP 728
                  .:..:|.:|...|...|      |....||::|:|     ....||:|..|  .||.:|
plant   294 EDNSGQKLKTNGAATSRSRKKKG------KKPVEKSYSLRP-----RIGRRTVNPAAGTTTPEAP 347

  Fly   729 -SVQQSASPKSKGNNLDDSILMKPPS------CMPPKSIASSKRKSKEPVKAVSKK 777
             ||::....:...||......:||..      .:||.:....:.|......:..||
plant   348 VSVEEEMKVEEGRNNNPVWFSLKPSKTQNIEMLLPPITACCIRVKDSNMTVSYLKK 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_523725.2 RING_Ubox 254..341 CDD:473075 25/88 (28%)
RAWUL_PCGF2_like 371..465 CDD:340602 5/93 (5%)
PHA03247 <1160..1381 CDD:223021
AT3G23060NP_188946.2 RING_Ubox 14..57 CDD:473075 19/42 (45%)
RAWUL_DRIP_like 364..467 CDD:340607 7/40 (18%)
Blue background indicates that the domain is not in the aligned region.

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