DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Psc and PCGF2

DIOPT Version :9

Sequence 1:NP_001286368.1 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_001356543.1 Gene:PCGF2 / 7703 HGNCID:12929 Length:344 Species:Homo sapiens


Alignment Length:434 Identity:136/434 - (31%)
Similarity:203/434 - (46%) Gaps:107/434 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 RPRPVLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLRKERFCPRCEMVINNAKP-- 310
            |...:.:|.:|||::|.||.||.|:||||||||||||.:|::.:|...::||.|::.::..:|  
Human     3 RTTRIKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCDVQVHKTRPLL 67

  Fly   311 NIKSDTTLQAIVYKLVPGLYERELMRKRAFYKDRP-EEAALATPEQRGDDTEHLIFSPSDD--MS 372
            :|:||.|||.|||||||||::.|:.|:|.||...| .|....:.|.||:..|....:.|||  :|
Human    68 SIRSDKTLQDIVYKLVPGLFKDEMKRRRDFYAAYPLTEVPNGSNEDRGEVLEQEKGALSDDEIVS 132

  Fly   373 LSLEYAE--------LGELKT-DSEPELVDTLRPRYLQCPAMCRVSHLKKFVYDKFEIDAQRFSI 428
            ||:|:.|        .|.|:. |.:.|....   |:|:|||...|.||.||:.:|.::.: ::.:
Human   133 LSIEFYEGARDRDEKKGPLENGDGDKEKTGV---RFLRCPAAMTVMHLAKFLRNKMDVPS-KYKV 193

  Fly   429 DIMYKVKTIVLLDYYTLMDIAYIYTWKRDAPMRFYYRVYESPQPLVKPAPRRVLPLKLEKQEREN 493
            :::|:.:.  |.:|||||||||||.|:|:.|:...||        |:||.:|:            
Human   194 EVLYEDEP--LKEYYTLMDIAYIYPWRRNGPLPLKYR--------VQPACKRL------------ 236

  Fly   494 QEQQLAVEVASSKVEPVSLPEDQKAEASIKVEEQESTREIVKEVIKDVAATPPTETLKLVINRNM 558
               .||           ::|...:...:....|.||        :.|.|.:|.|           
Human   237 ---TLA-----------TVPTPSEGTNTSGASECES--------VSDKAPSPAT----------- 268

  Fly   559 LDKREKSHSPQMSSKSSSKSSPCTPV-SSPSEPNIKLKIDLSKQNSVTIIDMSDPERREIVKPLK 622
                       :.:.|||..||.||. .|||.                    ..|.......|..
Human   269 -----------LPATSSSLPSPATPSHGSPSS--------------------HGPPATHPTSPTP 302

  Fly   623 PEKESRSKKKDKDGSPKSSSSSSSSSSGERKRKSPSPLTVPPLT 666
            |...|.:......||.....:.||:|.|.:...:.:|  |||||
Human   303 PSTASGATTAANGGSLNCLQTPSSTSRGRKMTVNGAP--VPPLT 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_001286368.1 zf-C3HC4 263..301 CDD:278524 22/37 (59%)
RAWUL 384..465 CDD:292824 29/81 (36%)
PCGF2NP_001356543.1 RING-HC_PCGF4 12..65 CDD:319650 26/52 (50%)
RING-HC finger (C3HC4-type) 18..56 CDD:319650 22/37 (59%)
Nuclear localization signal. /evidence=ECO:0000255 81..95 8/13 (62%)
RAWUL_PCGF2 130..228 CDD:340684 36/103 (35%)
PLN02217 <236..328 CDD:215130 28/167 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 240..344 32/155 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165157900
Domainoid 1 1.000 76 1.000 Domainoid score I8978
eggNOG 1 0.900 - - E1_KOG2660
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000290
OrthoInspector 1 1.000 - - otm41753
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR10825
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
76.840

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