DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Psc and Pcgf6

DIOPT Version :9

Sequence 1:NP_001286368.1 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_001347561.1 Gene:Pcgf6 / 71041 MGIID:1918291 Length:359 Species:Mus musculus


Alignment Length:368 Identity:109/368 - (29%)
Similarity:164/368 - (44%) Gaps:45/368 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 SENTLATTANAALA---AATTTTTTATPALATGKAAKTILENGIKKESTPPAVESVEASSSSSSS 188
            :||..|:.|..|.|   ........:.|||....||         .|..|.::....|:..|.|.
Mouse     9 TENKRASEAKRASAMPPPPPPPPPISPPALIPAPAA---------GEEGPASLGQAGAAGCSRSR 64

  Fly   189 SSSSSSSSSSWPTTRRATSEDASSNGGASADEEKSEEDPTA--AVAASSTATTTSDLATTSRPRP 251
            ..:.....|......|....|.........:||:.||:..:  ::...|....:.|    ...|.
Mouse    65 PPALEPERSLGRLRGRFEDYDEELEEEEEMEEEEEEEEEMSHFSLRLESGRADSED----EEERL 125

  Fly   252 VLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLRKERFCPRCEMVINNAKP--NIKS 314
            :.|..:.|:|:|.:|:||||:||||.||||:||.||::.|......||:|.:|::..:|  ||:.
Mouse   126 INLVELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRL 190

  Fly   315 DTTLQAIVYKLVPGLYERELMRKRAFYKDR----PEEAA-LATPEQRGDDTEHL--IF--SPSDD 370
            |..||.||||||..|.|||..:...|||:|    |:.|| ...|..:|...:.|  :|  .|..|
Mouse   191 DRQLQDIVYKLVINLEEREKKQMHDFYKERGLEVPKPAAPQPVPSSKGKTKKVLESVFRIPPELD 255

  Fly   371 MSLSLEY----AELGELKTD--SEPELVDTLRPRYLQCPAMCRVSHLKKFVYDKFEIDAQRFSID 429
            |||.||:    .:.|..|..  .||     |..::::......:.|::||:..|..:| ....:|
Mouse   256 MSLLLEFIGANEDTGHFKHSLRFEP-----LEKKFVRVSGEATIGHVEKFLRRKMGLD-PACQVD 314

  Fly   430 IMYKVKTIVLLDYYTLMDI--AYIYTWKRDAPMRFYYRVYESP 470
            |:  ....:|..|.||.:|  |...|..:|..:..:|.:..||
Mouse   315 II--CGDHLLERYQTLREIRRAIGDTAMQDGLLVLHYGLVVSP 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_001286368.1 zf-C3HC4 263..301 CDD:278524 21/37 (57%)
RAWUL 384..465 CDD:292824 19/84 (23%)
Pcgf6NP_001347561.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..116 24/115 (21%)
RING-HC_PCGF6 133..177 CDD:319652 24/43 (56%)
RING-HC finger (C3HC4-type) 137..175 CDD:319652 21/37 (57%)
RAWUL 284..>331 CDD:318447 11/49 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848286
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2660
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1203951at2759
OrthoFinder 1 1.000 - - FOG0000290
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.750

Return to query results.
Submit another query.