DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psc and pcgf5a

DIOPT Version :10

Sequence 1:NP_523725.2 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_001122184.1 Gene:pcgf5a / 562327 ZFINID:ZDB-GENE-080723-33 Length:234 Species:Danio rerio


Alignment Length:235 Identity:61/235 - (25%)
Similarity:113/235 - (48%) Gaps:30/235 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 RPVLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLRKERFCPRCEMVINNAKP--NI 312
            |..|:...|.:|.|.:|:||||..|.:.||||:||.||::.|..:...||.|.:.::...|  .:
Zfish     5 RKHLVRDFNRYITCSICRGYLIKPTAVTECLHTFCKSCIVQHFEESNECPECGIQVHETNPLEML 69

  Fly   313 KSDTTLQAIVYKLVPGLYERELMRKRAFYK-----------DRPEEAALATPEQRGDDTEHLIFS 366
            :.|.||:.|::||||||.|:|..::..|::           .|.:::.|:..:..|:..::....
Zfish    70 RLDKTLEEIIFKLVPGLREKEEHQESEFWRKHKIKSNGEDGPRAKKSRLSGEDDDGNGGDYHRSD 134

  Fly   367 PSDDMSLSL--EYAELGELKTDSEPELVDTLRPRYLQCPAMCRVSHLKKFVYDKFEIDAQRFSID 429
            |...:.|..  ...:.||       .:|..|..::::|.....|..:|||:..|.::.:. :.:|
Zfish   135 PQIAICLDCLRNNGQSGE-------SIVKGLMKKFIRCSTRVTVGTIKKFLCVKLKLPSS-YELD 191

  Fly   430 IMYKVKTIVLLDYYTLMDIAYIYTWKRDA----PMRFYYR 465
            ::...: |:..|:  .::..|...|:...    ||...||
Zfish   192 VLCNGE-IMGKDH--TLEFIYRTRWRLQGDSAYPMVLEYR 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_523725.2 RING_Ubox 254..341 CDD:473075 34/88 (39%)
RAWUL_PCGF2_like 371..465 CDD:340602 18/99 (18%)
PHA03247 <1160..1381 CDD:223021
pcgf5aNP_001122184.1 RING-HC_PCGF5 6..100 CDD:438395 36/93 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 97..130 4/32 (13%)
RAWUL_PCGF5 134..234 CDD:340604 21/106 (20%)
Blue background indicates that the domain is not in the aligned region.

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