DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psc and pcgf3

DIOPT Version :9

Sequence 1:NP_001286368.1 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_001016847.1 Gene:pcgf3 / 549601 XenbaseID:XB-GENE-987640 Length:242 Species:Xenopus tropicalis


Alignment Length:247 Identity:76/247 - (30%)
Similarity:121/247 - (48%) Gaps:45/247 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 RPVLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLRKERFCPRCEMVINNAKP--NI 312
            |.:.|..:|.||.|.||.||||:|||:.||||:||.|||:.:|.:...||.|.:||:.:.|  .|
 Frog     4 RKIKLWDINAHITCRLCNGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYI 68

  Fly   313 KSDTTLQAIVYKLVPGLYERELMRKRAFY----------------------------KDRPEEAA 349
            ..|.|:|.|||||||||.|.|:.::|.||                            :.:.:|..
 Frog    69 GHDRTMQDIVYKLVPGLQEAEMRKQREFYHKLGMEVPGDIKAEILTVKQHVEAHRNGETKTDEHT 133

  Fly   350 LATPEQRGDDTEHLIFSPSDDMSLSLEYAELGELKTDSEPELVDTLRPRYLQCPAMCRVSHLKKF 414
            ...|.:...:.:|......:.:|:.|| ....:|:         .|:.::::|.|...|.|||||
 Frog   134 HKEPPEEKQEEDHDYHRSDEQVSICLE-CNSSKLR---------GLKRKWIRCSAQATVLHLKKF 188

  Fly   415 VYDKFEIDAQRFSIDIMYKVKTIVLLDYYTLMDIAYIYTWK-RDAPMRFYYR 465
            :..|..:.:.. .:||:...:  :|...:||..:. :..|: :.||:..:||
 Frog   189 IAKKLNLSSFN-ELDILCNEE--ILGKDHTLKFVV-VTRWRFKKAPLLLHYR 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_001286368.1 zf-C3HC4 263..301 CDD:278524 22/37 (59%)
RAWUL 384..465 CDD:292824 18/81 (22%)
pcgf3NP_001016847.1 zf-C3HC4 17..55 CDD:278524 22/37 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 120..149 3/28 (11%)
RAWUL 165..236 CDD:292824 19/83 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1203951at2759
OrthoFinder 1 1.000 - - FOG0000290
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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