DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psc and Rnf2

DIOPT Version :10

Sequence 1:NP_523725.2 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_001388309.1 Gene:Rnf2 / 304850 RGDID:1305491 Length:336 Species:Rattus norvegicus


Alignment Length:303 Identity:64/303 - (21%)
Similarity:109/303 - (35%) Gaps:84/303 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   240 TSDLATTSRPRPVLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLRK-ERFCPRCEM 303
            |..|.....||     :::..::|.:|...|.|..|..||||.||..|:|..||. .:.||.|..
  Rat    33 TDGLEIVVSPR-----SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRK 92

  Fly   304 VINNAKPNIKSDTTLQAIVYKLVPGLYERELMRKRA---FYKDRPEEAALATPE----------- 354
            .: .:|.:::.|....|::.|:.|...|.|..::|.   ..|...::|...:.|           
  Rat    93 KL-VSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRL 156

  Fly   355 QRG--------------DDTEHLI----------------FSPSDDMSLSLEYAELG-----ELK 384
            |||              .|:.|..                ...|||..|.|:.....     .:.
  Rat   157 QRGKKQQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMD 221

  Fly   385 TDSEPELV-----------DTLRPRYLQCPAMCRVSHLKKFVYDKFEI-------DAQRFSIDI- 430
            ..||.|||           |:.:.||::......|.||.|::..:..:       ::.:.::|. 
  Rat   222 GASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTA 286

  Fly   431 ---MYKVKTIVLLDYYTLMDIAYIYT------WKRDAPMRFYY 464
               .|.:........:|:::.::...      ||.:.||..||
  Rat   287 SEKQYTIYIATASGQFTVLNGSFSLELVSEKYWKVNKPMELYY 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_523725.2 RING_Ubox 254..341 CDD:473075 26/90 (29%)
RAWUL_PCGF2_like 371..465 CDD:340602 23/127 (18%)
PHA03247 <1160..1381 CDD:223021
Rnf2NP_001388309.1 Interaction with HIP2. /evidence=ECO:0000250|UniProtKB:Q99496 2..179 37/151 (25%)
RING-HC_RING2 37..113 CDD:438398 23/81 (28%)
Interaction with nucleosomes via an acidic patch on histone H2A and histone H2B. /evidence=ECO:0000250|UniProtKB:Q99496 93..98 0/5 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 157..206 8/48 (17%)
RAWUL_RING2 225..330 CDD:340687 20/105 (19%)
Blue background indicates that the domain is not in the aligned region.

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