DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psc and Pcgf6l1

DIOPT Version :10

Sequence 1:NP_523725.2 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_001100405.1 Gene:Pcgf6l1 / 302366 RGDID:1562871 Length:232 Species:Rattus norvegicus


Alignment Length:226 Identity:71/226 - (31%)
Similarity:111/226 - (49%) Gaps:33/226 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 PALATGKAAKTILEN------GIKKESTPPAVESVEASSSSSSSSSSSSSSSSSWPTTR------ 203
            |:|:   .||.::|:      |:...:.|   |..:....:..:..:..:..:.||..:      
  Rat     4 PSLS---PAKPVVESSPETQEGVLDAAKP---EGAQGPQGAQGAQGAEGAKEALWPARQDLPPAG 62

  Fly   204 ----RATSEDASSNGGASADEEKSEEDPTAAVA-ASSTATTTSDLATTSRPRPVLLTAVNPHIIC 263
                .:..||.||:......|..:.|.|..... |...|...||    ...|.:.|:.:.|:|.|
  Rat    63 TIAPPSGKEDQSSSTSMGTQECLASEPPEGGEGKAEEKAAVESD----QEERLLPLSEMIPYISC 123

  Fly   264 HLCQGYLINATTIVECLHSFCHSCLINHLRKERFCPRCEMVINNAKP--NIKSDTTLQAIVYKLV 326
            .:|:||||:|.||.||||:||.||::.|......||:|.::::.|||  |::.|..||.||||||
  Rat   124 SICKGYLIDAATITECLHTFCKSCIVKHFEHSNRCPKCNIIVHEAKPHNNLRMDPQLQNIVYKLV 188

  Fly   327 PGLYERELMRKRAFYKDR----PEEAALATP 353
            .||.|:|..::|.|||:.    |:.||:..|
  Rat   189 SGLEEKEKKQRREFYKENRGQTPKPAAVPQP 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_523725.2 RING_Ubox 254..341 CDD:473075 42/88 (48%)
RAWUL_PCGF2_like 371..465 CDD:340602
PHA03247 <1160..1381 CDD:223021
Pcgf6l1NP_001100405.1 RING_Ubox 114..204 CDD:473075 43/89 (48%)
Blue background indicates that the domain is not in the aligned region.

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