DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psc and Pcgf2

DIOPT Version :10

Sequence 1:NP_523725.2 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_001099306.1 Gene:Pcgf2 / 287662 RGDID:1305097 Length:342 Species:Rattus norvegicus


Alignment Length:430 Identity:131/430 - (30%)
Similarity:197/430 - (45%) Gaps:103/430 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 RPRPVLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLRKERFCPRCEMVINNAKP-- 310
            |...:.:|.:|||::|.||.||.|:||||||||||||.:|::.:|...::||.|::.::..:|  
  Rat     3 RTTRIKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCDVQVHKTRPLL 67

  Fly   311 NIKSDTTLQAIVYKLVPGLYERELMRKRAFYKDRP-EEAALATPEQRGDDTEHLIFSPSDD--MS 372
            :|:||.|||.|||||||||::.|:.|:|.||...| .|....:.|.||:..|....:..||  :|
  Rat    68 SIRSDKTLQDIVYKLVPGLFKDEMKRRRDFYAAYPLTEVPNGSNEDRGEVLEQEKGALGDDEIVS 132

  Fly   373 LSLEYAELGELKTDSEPELVDT-------LRPRYLQCPAMCRVSHLKKFVYDKFEIDAQRFSIDI 430
            ||:|:.| |....:.:..||:.       ...|:|:|||...|.||.||:.:|.::.: ::.::|
  Rat   133 LSIEFYE-GVRDREEKKSLVENGDGDKEKTGVRFLRCPAAMTVMHLAKFLRNKMDVPS-KYKVEI 195

  Fly   431 MYKVKTIVLLDYYTLMDIAYIYTWKRDAPMRFYYRVYESPQPLVKPAPRRVLPLKLEKQERENQE 495
            :|:.:.  |.:|||||||||||.|:|:.|:...|||    ||..|   |..||            
  Rat   196 LYEDEP--LKEYYTLMDIAYIYPWRRNGPLPLKYRV----QPACK---RLTLP------------ 239

  Fly   496 QQLAVEVASSKVEPVSLPEDQKAEASIKVEEQESTREIVKEVIKDVAATPPTETLKLVINRNMLD 560
                           ::|...:...:....|.||        :.|.|.:|.|             
  Rat   240 ---------------TVPTPSEGTNTSGASECES--------VSDKAPSPAT------------- 268

  Fly   561 KREKSHSPQMSSKSSSKSSPCTPV-SSPSEPNIKLKIDLSKQNSVTIIDMSDPERREIVKPLKPE 624
                     :.:.|||..||.||. .|||.                    ..|.......|..|.
  Rat   269 ---------LPATSSSLPSPATPSHGSPSS--------------------HGPPATHPTSPTPPS 304

  Fly   625 KESRSKKKDKDGSPKSSSSSSSSSSGERKRKSPSPLTVPP 664
            ..:.:......|:.....:.||:|.|.:...:.:|  .||
  Rat   305 TAAGTTTATNGGTSNCLQTPSSTSRGRKMTVNGAP--CPP 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_523725.2 RING_Ubox 254..341 CDD:473075 46/88 (52%)
RAWUL_PCGF2_like 371..465 CDD:340602 36/100 (36%)
PHA03247 <1160..1381 CDD:223021
Pcgf2NP_001099306.1 RING-HC_PCGF4 5..101 CDD:438394 48/95 (51%)
RAWUL_PCGF2 130..228 CDD:340684 36/101 (36%)
PHA03247 <222..304 CDD:223021 30/165 (18%)
Blue background indicates that the domain is not in the aligned region.

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