DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psc and spat-3

DIOPT Version :9

Sequence 1:NP_001286368.1 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_001024904.2 Gene:spat-3 / 259704 WormBaseID:WBGene00020496 Length:2476 Species:Caenorhabditis elegans


Alignment Length:1971 Identity:388/1971 - (19%)
Similarity:607/1971 - (30%) Gaps:675/1971 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 KSQLSTLAKTTTTTATNKAAKSVVSNANSSGNNSSKKLALSQSQKTTTTTTPPTTTTTTTAAAAA 98
            |...||..||     ||::..|..|:.:|..|...||....:.:....|.....:..:....|:.
 Worm   375 KPSCSTSKKT-----TNRSRDSSESDNDSRDNELQKKKRKMKRKNVPKTDGSDVSNESFDEDASG 434

  Fly    99 EATTNADKMQKQQQLK-----QQLFA----ACSIKVKSENTLATT-----ANAA--LAAATTTTT 147
            |..  |.|:.|:.:.|     ::.||    ...|...||::|.::     .|||  .|.......
 Worm   435 EVV--ATKLIKESKKKPCGRPKKKFAPELIEGDIPTPSEDSLTSSDEERDDNAADPYAFVFQKEF 497

  Fly   148 TATPALATGKAAKTILEN---------------------GIKKESTPPAVESVEASSSSSSSSSS 191
            ...|. ..|...|..|.|                     .:..:.:....||.||....||..|.
 Worm   498 NRDPR-RDGHPEKDKLYNFDFMIDMNHQVDRKFEKDGEIHVISDDSNSEHESDEAEDRESSIDSE 561

  Fly   192 SSSSSSSWPTTRR----ATSED------------------ASSNGGASAD-EEKSEEDPTAAVAA 233
            .....|.:.:.|:    .||.|                  .|..|..|.| ..|.||.|......
 Worm   562 HEKEISKFLSHRQPLPNPTSVDDDCQVITVVKKDVKQSAITSKPGETSPDSSSKIEEKPDKVSEE 626

  Fly   234 SSTATTTSDLATTSRPRPVLLTAVNPHIICHLCQGYLINA--TTIVECLHSFCHSCLINHLRKER 296
            .|....|.:..|..:.....|..:..| ...:..|||...  |.|..              .|.:
 Worm   627 VSDDEMTPEHITADKGTDTFLNNIMEH-DDEMYGGYLFRPGDTGISR--------------PKVQ 676

  Fly   297 FCPRCEMVINNAKPNIKSDTTLQAIVYKLVPGLYERELMRKRAFYKDRPEEAALATPEQ-RGDDT 360
            ..|....:..|..|.         .||.:.|....:|..:|...   .||:..:::.|. ...|:
 Worm   677 RAPGTNRLSMNVCPE---------AVYVVYPQPVLKEGKKKLVI---PPEDYEISSDETVTLSDS 729

  Fly   361 EHLIFSPSDDMSLSLEYAELG------------ELKTDSEPELVDTLRPRYLQCPAMCRVSHLKK 413
            |..  |||.:|..| |.:|.|            |.:..|.|....|.|.|.:....:  .:..:|
 Worm   730 EET--SPSAEMEQS-ETSEAGPSTIIKTSGTERETQGSSSPSEPSTSRDRKMHKRKL--DTRRRK 789

  Fly   414 FVYDKFEIDAQRFSID-----------IMYKVKTIVLLDYY---------TLMDIAYIYTWKRDA 458
            ...|....|...||||           |.:||       :|         :.:|    :|.:|:|
 Worm   790 LADDSDLSDFDVFSIDGNELVATGKPIIKHKV-------FYDSANRMPSKSNLD----FTGRRNA 843

  Fly   459 PMRFYYRVYESPQPLVKPAPRRVLPL----KLEKQERENQEQQL---------AVEVASSKVEP- 509
                                 |.:|:    :|.:::..::|.::         |||.||.|:.. 
 Worm   844 ---------------------REIPMEEISRLAEEQVAHEEYKIHRRRQVVLEAVEAASKKLNVY 887

  Fly   510 VSLPEDQKAEASIKVEEQESTREIVKEVIKDVAATPPTETLKLVINRNMLDKREKSHSPQMSSKS 574
            |...|::      ::||:|:..|   ||:|..:.|.|..|          :....|.:|.....:
 Worm   888 VDTTEEE------EIEEEETPEE---EVVKVASPTAPIAT----------ENPTTSTAPFEEGVA 933

  Fly   575 SSKS-------SPCTPVSSPSEPNIKLKIDLSKQNSVTIID------------MSDPERREIVKP 620
            ..::       .|..|.||......:|.|:...:....|.|            :.:.|.||..:|
 Worm   934 MKETPIEEIFFDPDEPCSSAQAAQRELIIERVGKEQQIIEDSLEQNRKPSSKTVKESESREAQEP 998

  Fly   621 L--KPEKESRSKKKDKDG-------SPKSSSSSSSSSSGERKRKSPSPLTVPPLTIRTERIMSPS 676
            .  |.|.||..:|||.|.       ..::|||.|..|..|.:.......|| .::::.|:.:|..
 Worm   999 RIEKDEMESEQQKKDADNPTVEVDKESEASSSESDKSDFEDETLDAQSKTV-KISLKHEKTVSDE 1062

  Fly   677 G-----------VSTLSPRVTSGAFSEDPKSEFLKSFALKPIKVKVESPERTLNNRAITPPSPSV 730
            .           |:|...::......|...:||||..|.:|               |:|....::
 Worm  1063 EIEDFDTKFGEFVATADAKMIKRTIGEYVSTEFLKLVAQQP---------------AVTDEVLAL 1112

  Fly   731 --------QQSASPKSKGNNLDDSILMKPPSCMPPKSIASSKRKSKEPVKAVSKKQKLSPPLPT- 786
                    |:.::.|..|...:     |.|..:..:|:..:.|:|     ..:|.:.:...||| 
 Worm  1113 GFCVRNTDQEFSTIKETGKRTN-----KNPDDVRLESMVKNFRES-----FAAKHRPVPRKLPTN 1167

  Fly   787 -----------------VD-----FKIRLPVTNGNSSGTASPKIEKPLMPPPAK----------- 818
                             ||     .||.:.:.....:.|.: .:.:|:...|.:           
 Worm  1168 IERMYIERAHMVKYKHVVDMEPLHMKILIALQKQQIAATCA-NLSQPVTVTPEEHAEQVQLLHNL 1231

  Fly   819 --PPMLAPRKLQPSAQFAPPPSPIHHHAGVQMSAPGNRTPIAKRYQPILPKASRPNPFANI---- 877
              |.:|.|  |..:.|||     :..|...|.:....|.....:.|..|  |:|....|.:    
 Worm  1232 QNPSILRP--LLNNPQFA-----LTLHKAQQQAIQQQRAQQKAQTQKEL--AARQAEQARVEELA 1287

  Fly   878 -----PNDVNRLLKDAGTEIKSIGGGSVENNSNA----AQKPHLY-----GPKGESKMGPPALPA 928
                 ..|..:.|:..|.::.::.|..|.::.||    ||:..|.     ....:|...|..|  
 Worm  1288 RKRIAQEDAEKALRQKGEQMSNVSGIPVSSDQNAQSSNAQQTGLIENQTTTTNSDSLTRPNTL-- 1350

  Fly   929 TTPSQGNKNVGKQAGNLPM-----SAPPNKGNSSNNYLNLALFNSSKCKGKEAPPGCRTPMYTPN 988
                ..|.::| ::..:|:     |:.......|.||.::                   |:.||.
 Worm  1351 ----ADNSHLG-ESQQIPVIESIQSSTSEALKESENYKDM-------------------PILTPA 1391

  Fly   989 SPIYSPSSPQYVPSYNIPTMPTYKYTPKPTPNSGSGNGGSGSYLQNMLGGGNGGSLGGLFPSPPT 1053
            |.:.|.||   .|:...|:.|...|....:|:         ..::..|     ||.|.|...||.
 Worm  1392 STVSSKSS---APATRRPSRPCSSYDRPSSPS---------VVIRERL-----GSDGALINRPPN 1439

  Fly  1054 KSDQNTNPAQGGGGSSSA-------TQSGGNNGIVNNNIYMPNEDAPEKQQVKVKSLLNSCNINI 1111
            :.  |.:.::.....|.|       ...|.|..|:..||         ...|:...|....:|..
 Worm  1440 RC--NIDKSRSRSPISRAPVETVRINDHGQNETILAGNI---------THTVETTILEEGTSIGQ 1493

  Fly  1112 PSSLSI------------TISRDNG------DSSSPN-----------------NGQHP------ 1135
            .|::..            ||..||.      |....|                 |..||      
 Worm  1494 DSTIRYDGECSTTQYIDKTIDLDNSKNGTNVDEEQSNVLKLRENDLNREMLRYANRYHPSTMLAM 1558

  Fly  1136 --------------------------KHKSPV--NNYIEIV--------------------KLPD 1152
                                      :|.|..  ...:|:|                    .:.:
 Worm  1559 GNLSINERHNKVQQVLASQELQDLIARHTSGAVSQTQVEVVGGEGVCAGTSDAIGETDEDDDVEE 1623

  Fly  1153 QPQ---DQVQAAKEAQK-RQSPPAA-------------VPGHLAAKLP--------------PPP 1186
            :|:   ||::.||:..| ||...::             |.|.:..:.|              |..
 Worm  1624 EPEFTVDQLELAKKILKQRQGLESSEDSDSDEDMVYDNVDGSVIRRAPHKKRETRKKKNIFVPNI 1688

  Fly  1187 PSK-------------------AIPSPQHLVSRMTPPQLP--KVATPPPPSSPRVITPPKTSPPA 1230
            |.|                   .|.|.:....|:..||.|  :.|||..|    |..|.|.|..|
 Worm  1689 PPKIRRKYVDKKIEMERAKYRARIKSQKMASIRIAVPQKPTQQFATPQQP----VRGPGKHSAAA 1749

  Fly  1231 NAAKVTP--------------LKPVLTPTQVDKKTPSPEKRTA-------------------AQM 1262
             ||:.||              ::|.|...|:.....:|.|.||                   ||.
 Worm  1750 -AARATPKPKKAKMSNVQMSIVQPPLPLHQLQGHMSAPTKITAVPNVAAGFHQNQQQLYSDMAQA 1813

  Fly  1263 GSHSP----------TASENKSPKGGPAGVANSTGGAQNGDPAAKKFRPILPRQNGMPELAPKLP 1317
            ...:|          :|.:.::|:...|.:.....|| |...|        |:|.||        
 Worm  1814 PQSTPIRTTPQPGTGSAPQAQTPQSHLAQLGQFVNGA-NQQQA--------PQQQGM-------- 1861

  Fly  1318 TLAPFVGFNPLQNPAAGKKVPPSKKSPNAGAAAHQSGQQKLVNGGQSQPAQQ------KTSPPAQ 1376
                   :...|..|....|..:.::..|..||..:.|.::....::.|.||      ....|.|
 Worm  1862 -------YTAAQLQAMQAAVAQTAQAAQAAYAAEAAYQAQVAQQARAAPPQQLVQRQVPVGHPGQ 1919

  Fly  1377 KNQQQVKKVSKNPTPPPPSLPAVGKMM-PHPVMHSQNAPLSIASSAS----------AAAVASGQ 1430
            .|.....::.....|.....||..:|| ....|...||...:..|..          ....|..|
 Worm  1920 VNVPMPAQMLNQGNPQMAVNPAQAQMMDERRKMEEVNAVYHLMQSRGQFPPTNQELFQVQFAQAQ 1984

  Fly  1431 LDLSNFLKENLRRVHAAQAAQAAQVAAAANQSNMMYNLAQMGHMTPAMYNYQQAYFREQLSRMQR 1495
            .||         |..|||||||||  |.|..:||......:..        |||..:::.:|.|.
 Worm  1985 ADL---------RSAAAQAAQAAQ--AQAQMTNMRAQAEAVAR--------QQAMMKQEQARAQA 2030

  Fly  1496 VGNEVFNDYLQKLKTAAATGGGGPVEGELKPMLPTVTLPSPGATPPAASPKTSPLPAGKLTAAAT 1560
            ...|...   .|.:|.||.   ..|:.|.:                |.......:...:..||.|
 Worm  2031 AAKEAAR---LKAETEAAK---AKVQAEAE----------------ARRKAEQEMRVRQAQAAQT 2073

  Fly  1561 -APQTKGNSSSGAANARQQTA 1580
             |.|.:..|.:.|.|..|..|
 Worm  2074 QAAQAQAQSQAHAQNQAQTQA 2094

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_001286368.1 zf-C3HC4 263..301 CDD:278524 7/39 (18%)
RAWUL 384..465 CDD:292824 20/100 (20%)
spat-3NP_001024904.2 RING-HC_RNF138 158..203 CDD:319458
MSCRAMM_SdrD <290..583 CDD:380149 46/215 (21%)
GREB1 <1301..>1430 CDD:374106 32/171 (19%)
PAT1 <1724..>1845 CDD:370676 29/125 (23%)
DUF1720 2150..>2199 CDD:369766
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 108 1.000 Inparanoid score I3489
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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