DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psc and Pcgf2

DIOPT Version :9

Sequence 1:NP_001286368.1 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_001156779.1 Gene:Pcgf2 / 22658 MGIID:99161 Length:342 Species:Mus musculus


Alignment Length:430 Identity:130/430 - (30%)
Similarity:196/430 - (45%) Gaps:103/430 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 RPRPVLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLRKERFCPRCEMVINNAKP-- 310
            |...:.:|.:|||::|.||.||.|:||||||||||||.:|::.:|...::||.|::.::..:|  
Mouse     3 RTTRIKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCDVQVHKTRPLL 67

  Fly   311 NIKSDTTLQAIVYKLVPGLYERELMRKRAFYKDRP-EEAALATPEQRGDDTEHLIFSPSDD--MS 372
            :|:||.|||.|||||||||::.|:.|:|.||...| .|....:.|.||:..|....:..||  :|
Mouse    68 SIRSDKTLQDIVYKLVPGLFKDEMKRRRDFYAAYPLTEVPNGSNEDRGEVLEQEKGALGDDEIVS 132

  Fly   373 LSLEYAELGELKTDSEPELVDT-------LRPRYLQCPAMCRVSHLKKFVYDKFEIDAQRFSIDI 430
            ||:|:.| |....:.:..|.:.       ...|:|:|||...|.||.||:.:|.::.: ::.::|
Mouse   133 LSIEFYE-GVRDREEKKNLTENGDGDKEKTGVRFLRCPAAMTVMHLAKFLRNKMDVPS-KYKVEI 195

  Fly   431 MYKVKTIVLLDYYTLMDIAYIYTWKRDAPMRFYYRVYESPQPLVKPAPRRVLPLKLEKQERENQE 495
            :|:.:.  |.:|||||||||||.|:|:.|:...|||    ||..|   |..||            
Mouse   196 LYEDEP--LKEYYTLMDIAYIYPWRRNGPLPLKYRV----QPACK---RLTLP------------ 239

  Fly   496 QQLAVEVASSKVEPVSLPEDQKAEASIKVEEQESTREIVKEVIKDVAATPPTETLKLVINRNMLD 560
                           ::|...:...:....|.||        :.|.|.:|.|             
Mouse   240 ---------------TVPTPSEGTNTSGASECES--------VSDKAPSPAT------------- 268

  Fly   561 KREKSHSPQMSSKSSSKSSPCTPV-SSPSEPNIKLKIDLSKQNSVTIIDMSDPERREIVKPLKPE 624
                     :.:.|||..||.||. .|||.                    ..|.......|..|.
Mouse   269 ---------LPATSSSLPSPATPSHGSPSS--------------------HGPPATHPTSPTPPS 304

  Fly   625 KESRSKKKDKDGSPKSSSSSSSSSSGERKRKSPSPLTVPP 664
            ..:.:......|:.....:.||:|.|.:...:.:|  .||
Mouse   305 TAAGTTTATNGGTSNCLQTPSSTSRGRKMTVNGAP--CPP 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_001286368.1 zf-C3HC4 263..301 CDD:278524 22/37 (59%)
RAWUL 384..465 CDD:292824 29/87 (33%)
Pcgf2NP_001156779.1 RING-HC_PCGF4 12..65 CDD:319650 26/52 (50%)
Nuclear localization signal. /evidence=ECO:0000255 81..95 8/13 (62%)
RAWUL_PCGF2 130..228 CDD:340684 35/101 (35%)
PHA03247 <222..304 CDD:223021 30/165 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 237..342 29/183 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848284
Domainoid 1 1.000 76 1.000 Domainoid score I8950
eggNOG 1 0.900 - - E1_KOG2660
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000290
OrthoInspector 1 1.000 - - otm43804
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR10825
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.800

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