DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psc and Rnf2

DIOPT Version :10

Sequence 1:NP_523725.2 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_035407.1 Gene:Rnf2 / 19821 MGIID:1101759 Length:336 Species:Mus musculus


Alignment Length:109 Identity:26/109 - (23%)
Similarity:46/109 - (42%) Gaps:16/109 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   359 GMSNGGTSVAAKLLLNRSVVVQSMMD--QNQIALAQLNQQINNLNNLNMQLNQMSMNDLPPPPPI 421
            |:..|.||:.....|:.|::.:..:.  .:::.:.:|..|:.:...||:||:..|...:......
Mouse   139 GIDRGMTSIQVLSPLSDSILAEKTVGVVDDRVTITELGLQLVSGLTLNLQLSTGSNRAISATATT 203

  Fly   422 PEQLS-PKQSPPNVAPPPPPPPPPMLDGPLSPSKAPVANGDLYN 464
            .|.|| |||.             .::...|..|...:|..||||
Mouse   204 QEVLSNPKQE-------------ALISAWLQFSDGSMAPLDLYN 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_523725.2 RING_Ubox 254..341 CDD:473075
RAWUL_PCGF2_like 371..465 CDD:340602 22/97 (23%)
PHA03247 <1160..1381 CDD:223021
Rnf2NP_035407.1 Interaction with HIP2. /evidence=ECO:0000250|UniProtKB:Q99496 2..179 7/39 (18%)
RING-HC_RING2 37..113 CDD:438398
Interaction with nucleosomes via an acidic patch on histone H2A and histone H2B. /evidence=ECO:0000250|UniProtKB:Q99496 93..98
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 157..206 7/48 (15%)
RAWUL_RING2 225..330 CDD:340687 5/10 (50%)
Blue background indicates that the domain is not in the aligned region.

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