DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Psc and Bmi1

DIOPT Version :10

Sequence 1:NP_523725.2 Gene:Psc / 36431 FlyBaseID:FBgn0005624 Length:1601 Species:Drosophila melanogaster
Sequence 2:NP_031578.2 Gene:Bmi1 / 12151 MGIID:88174 Length:324 Species:Mus musculus


Alignment Length:418 Identity:134/418 - (32%)
Similarity:192/418 - (45%) Gaps:116/418 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 RPRPVLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLRKERFCPRCEMVINNAKP-- 310
            |...:.:|.:|||::|.||.||.|:||||:|||||||.:|::.:|...::||.|::.::..:|  
Mouse     3 RTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLL 67

  Fly   311 NIKSDTTLQAIVYKLVPGLYERELMRKRAFYKDRPE-EAALATPEQRGD--DTEHLIFSPSDDMS 372
            ||:||.|||.|||||||||::.|:.|:|.||...|. :||..:.|.||:  |.|..|.:..:.:|
Mouse    68 NIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAHPSADAANGSNEDRGEVADEEKRIITDDEIIS 132

  Fly   373 LSLEYAELGEL--KTDSEPELVDTLRPRYLQCPAMCRVSHLKKFVYDKFEIDAQRFSIDIMYKVK 435
            ||:|:.:...|  |.:.|....:....|||:|||...|.||:||:..|.:| ...|.||:||:.:
Mouse   133 LSIEFFDQSRLDRKVNKEKPKEEVNDKRYLRCPAAMTVMHLRKFLRSKMDI-PNTFQIDVMYEEE 196

  Fly   436 TIVLLDYYTLMDIAYIYTWKRDAPMRFYYRVYESPQPLVKPAPRRVLPLKLEKQERENQEQQLAV 500
            .  |.||||||||||||||:|:.|:...||        |:|..:|                    
Mouse   197 P--LKDYYTLMDIAYIYTWRRNGPLPLKYR--------VRPTCKR-------------------- 231

  Fly   501 EVASSKVEPVSLPEDQKAEASIKVEEQESTREIVKEVIKDVAATPPTETLKLVINRNMLDKREKS 565
                                 :|:..|........|:..|..:                   :|:
Mouse   232 ---------------------MKMSHQRDGLTNAGELESDSGS-------------------DKA 256

  Fly   566 HSPQ--MSSKSSSKSSPCTPVSSPSEPNIKLKIDLSKQNSVTIIDMSDPERREIVKPLKPEKESR 628
            :||.  :.|.||...||.|||.||                               .|..|...| 
Mouse   257 NSPAGGVPSTSSCLPSPSTPVQSP-------------------------------HPQFPHISS- 289

  Fly   629 SKKKDKDGSPKSSSSSSSSSSGERKRKS 656
                ..:|:..|.|::..||...|.|||
Mouse   290 ----TMNGTSNSPSANHQSSFASRPRKS 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PscNP_523725.2 RING_Ubox 254..341 CDD:473075 46/88 (52%)
RAWUL_PCGF2_like 371..465 CDD:340602 42/95 (44%)
PHA03247 <1160..1381 CDD:223021
Bmi1NP_031578.2 RING-HC_PCGF4 5..101 CDD:438394 48/95 (51%)
Nuclear localization signal. /evidence=ECO:0000255 81..95 8/13 (62%)
RAWUL_PCGF4 130..224 CDD:340685 42/96 (44%)
Interaction with PHC2. /evidence=ECO:0000250|UniProtKB:P35226 160..180 11/19 (58%)
Interaction with E4F1. /evidence=ECO:0000250|UniProtKB:P35226 162..226 35/74 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 232..324 29/137 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.