DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG44251 and Pkd1l3

DIOPT Version :10

Sequence 1:NP_725246.1 Gene:CG44251 / 36429 FlyBaseID:FBgn0265186 Length:478 Species:Drosophila melanogaster
Sequence 2:XP_038954217.1 Gene:Pkd1l3 / 100362565 RGDID:2324490 Length:2183 Species:Rattus norvegicus


Alignment Length:353 Identity:84/353 - (23%)
Similarity:114/353 - (32%) Gaps:115/353 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 VPSKQLGFISQRGEAL--------PKDIFEVLCGQNLVWIKCYDHVIPENAVLCGRTSL-DQPVY 102
            :|.||.| |:|.|.||        |.:...|:...|..:.: :|..:.::..:|...:: .|...
  Rat    92 LPRKQPG-ITQTGRALVLRAAAKKPDECTSVVKRSNAFFPR-WDQCLKKHHFICQAVAVPPQGAN 154

  Fly   103 IGRGHYEGHLIIGKISSVHRALFIAFRGAERRLDSYEILVEERRVVPG------WQLPPPPPPLE 161
            |.|...:....:.|            ||||.          ||.::||      ...||.||.|.
  Rat   155 IWRNELDPWKPMKK------------RGAEL----------ERHMIPGDGPPLSMCHPPAPPELS 197

  Fly   162 EPEKCPLSP---------------------------PPPPSPPAMAPPLPAKPYPYPDL-----A 194
            |....|:.|                           ....|||.:....||.....|.:     |
  Rat   198 EILCFPIDPVSSVLPKATHKMTITSPTRSSQVTSVVTASSSPPQVTSDTPASSSSPPQVTSDTPA 262

  Fly   195 AMPFPDRPPAYTPTPDPMPPVGGVMVMPSPTPPPPAGGVLVM-----PRPPPPP-----PPAGGV 249
            :...|.:..:.||:....|        |..|...||...|..     |....||     .||.. 
  Rat   263 SSSSPPQVTSDTPSSSSSP--------PQVTSDTPASSSLPQVTSDTPASSSPPQVTSDTPASS- 318

  Fly   250 LVMPPPPPSFTPAEVAP-------PPSFVPAEVT-----AVSVPVAPSFTPASTYNPYEAGCSSY 302
              .||...|.|||..:|       |.|..|.:||     :.|.|...|.||||:..|.   .:|.
  Rat   319 --SPPQVTSDTPASSSPPQVTSDTPASSSPPQVTSDTSASSSPPQVTSDTPASSSPPQ---VTSD 378

  Fly   303 TPAECAAPSAYDAYGYGNNYDVWVSAEP 330
            |||....|..        ..|..||:.|
  Rat   379 TPASSITPQV--------TTDTPVSSSP 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG44251NP_725246.1 DUF3421 26..134 CDD:463390 22/95 (23%)
DUF3421 345..455 CDD:463390
Pkd1l3XP_038954217.1 CLECT 37..144 CDD:153057 13/53 (25%)
Herpes_BLLF1 <215..601 CDD:282904 50/206 (24%)
GPS 1002..1040 CDD:460350
PLAT_polycystin 1111..1230 CDD:238850
Polycystin_dom 1688..1874 CDD:466668
PKD_channel 1879..2096 CDD:462341
Blue background indicates that the domain is not in the aligned region.

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