DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdr49 and Abcb9

DIOPT Version :9

Sequence 1:NP_523724.2 Gene:Mdr49 / 36428 FlyBaseID:FBgn0004512 Length:1302 Species:Drosophila melanogaster
Sequence 2:NP_071574.1 Gene:Abcb9 / 63886 RGDID:620254 Length:762 Species:Rattus norvegicus


Alignment Length:602 Identity:205/602 - (34%)
Similarity:314/602 - (52%) Gaps:40/602 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   714 EVVSKVSFTQLMKLNSPEWRFIVVGGIASVMHGATFPLWGLFFGDFF----------GILSDGDD 768
            |..|..:..:|:....|:..|:|         .|:|.|.....|:.|          .|:.....
  Rat   163 EQASGATLQKLLSYTKPDVAFLV---------AASFFLIVAALGETFLPYYTGRAIDSIVIQKSM 218

  Fly   769 DVVRAEVLKISMIFVGIGLMAGLGNMLQTYMFTTAGVKMTTRLRKRAFGTIIGQDIAYFDDERNS 833
            |.....|:.:.::.:|..|.||:...:.|.:|    .::..|||...|.:::.|:.::||:  |.
  Rat   219 DQFTTAVVVVCLLAIGSSLAAGIRGGIFTLVF----ARLNIRLRNCLFRSLVSQETSFFDE--NR 277

  Fly   834 VGALCSRLASDCSNVQGATGARVGTMLQAVATLVVGMVVGFVF--SWQQTLLTLVTLPLVCLSVY 896
            .|.|.|||.||.:.|.......:...|:.... |.|:|| |:|  |||.:|:|.:..|::.:...
  Rat   278 TGDLISRLTSDTTMVSDLVSQNINIFLRNTVK-VTGVVV-FMFSLSWQLSLVTFMGFPIIMMVSN 340

  Fly   897 LEGRFIMKSAQKAKASIEEASQVAVEAITNIRTVNGLCLERQVLDQYVQQIDRVDIACRRKVRFR 961
            :.|::..:.:::.::::..||..|.|.|:.::||.....|.:..:.:::::.:| ....||....
  Rat   341 IYGKYYKRLSKEVQSALARASTTAEETISAMKTVRSFANEEEEAEVFLRKLQQV-YKLNRKEAAA 404

  Fly   962 GLVFALGQAAPFLAYGIS-MYYGGILVAEERMNYEDIIKVAEALIFGSWMLGQALAYAPNVNDAI 1025
            .:.:..|.....|...:| :||||.||...:|:..::|    |.|...::||..:....:|...:
  Rat   405 YMSYVWGSGLTLLVVQVSILYYGGHLVISGQMSSGNLI----AFIIYEFVLGDCMESVGSVYSGL 465

  Fly  1026 L-SAGRLMDLFKRTSTQPNPPQSPYNTVEKSEGDIVYENVGFEYPTRKGTPILQGLNLTIKKSTT 1089
            : ..|....:|:....||..........:..||.:.:|||.|.|.||..|.:||.::.::.....
  Rat   466 MQGVGAAEKVFEFIDRQPTMVHDGRLAPDHLEGRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKV 530

  Fly  1090 VALVGPSGSGKSTCVQLLLRYYDPVSGSVNLSGVPSTEFPLDTLRSKLGLVSQEPVLFDRTIAEN 1154
            .|||||||||||:||.:|..:|....|.|.|.|.|...:....|...:.|||||||||.|:|.:|
  Rat   531 TALVGPSGSGKSSCVNILENFYPLQGGRVLLDGEPIGAYDHKYLHRVISLVSQEPVLFARSITDN 595

  Fly  1155 IAYGNNFRDDVSMQEIIEAAKKSNIHNFISALPQGYDTRLG-KTSQLSGGQKQRIAIARALVRNP 1218
            |:||   ...|..:.::|||:|:|.|.||..|..||.|..| |.:|||||||||:|:||||||||
  Rat   596 ISYG---LPTVPFEMVVEAAQKANAHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNP 657

  Fly  1219 KILILDEATSALDLESEKVVQQALDEARSGRTCLTIAHRLTTVRNADLICVLKRGVVVEHGTHDE 1283
            .:|||||||||||.|||.::|||:.......|.|.|||||:||..|.||.||.:|.||:.|||.:
  Rat   658 PVLILDEATSALDAESEYLIQQAIHGNLQRHTVLIIAHRLSTVERAHLIVVLDKGRVVQQGTHQQ 722

  Fly  1284 LMALNKIYANLYLMQQV 1300
            |:|...:||.|...|.:
  Rat   723 LLAQGGLYAKLVQRQML 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr49NP_523724.2 MdlB 34..640 CDD:224055
ABC_membrane 116..352 CDD:279056
ABC_MTABC3_MDL1_MDL2 402..636 CDD:213216
MdlB 735..1299 CDD:224055 199/578 (34%)
ABC_membrane 739..998 CDD:279056 65/271 (24%)
ABC_MTABC3_MDL1_MDL2 1059..1298 CDD:213216 121/239 (51%)
Abcb9NP_071574.1 3a01208 44..734 CDD:273363 203/595 (34%)
ABC_membrane 189..451 CDD:279056 67/274 (24%)
ABCC_TAP 489..714 CDD:213215 113/227 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100059
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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