DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdr49 and haf-8

DIOPT Version :9

Sequence 1:NP_523724.2 Gene:Mdr49 / 36428 FlyBaseID:FBgn0004512 Length:1302 Species:Drosophila melanogaster
Sequence 2:NP_502776.1 Gene:haf-8 / 190369 WormBaseID:WBGene00001818 Length:633 Species:Caenorhabditis elegans


Alignment Length:618 Identity:208/618 - (33%)
Similarity:309/618 - (50%) Gaps:104/618 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 FIPYFMIIYGEFTSLLVDRTVGVGTSSPAFALPMFGGGQQLTNASKEENNQAI-----------I 112
            |:|       .:|.|::|  ..:....||..      ||.:|||.:.::...|           .
 Worm    57 FVP-------AYTLLILD--CALNLIEPALY------GQMMTNAIQMKSFDIIKRACLLLALIQF 106

  Fly   113 DDATAFGIGSLVGSVAMFLLITLAIDLANRIALNQIDRIRKLFLEAMLRQDIAWYDTSSGSNFAS 177
            .:||.        ..|.:..:..|..|..|       .||.....::|.|:|:::|.:......|
 Worm   107 SEATC--------KSACYFFMQYAEKLTAR-------NIRIQLFRSILHQEISFFDENKTGQLVS 156

  Fly   178 KMTEDLDKLKEGIGEKIVIVVFLIMTFVIGIVSAFVYGWKLTLVVLSCVPFIIAATSVVARLQG- 241
            ::|.|.:.:...:...|..:|..:..|...|...|.|.|:|||.  |.:.|.|  |.::.|..| 
 Worm   157 RITHDSESISNTLPVHIETLVNNLFMFFGSIPIMFCYSWQLTLT--SFIEFPI--TLLMTRYYGL 217

  Fly   242 ---SLAEKELKSYSDAANVVEEVFSGIRTVFAFSGQEKEKERFGKLLIPAENTG-----RKKGLY 298
               .|:|||..:.:.:...||||.|.||||.:|:.:..|::|:.|      ||.     ..|.:.
 Worm   218 AVEKLSEKENDATAASNETVEEVLSAIRTVRSFAAENFEQKRYTK------NTEDWFKISTKTVT 276

  Fly   299 SGMGNALSW--------LIIYLCMALAIWYGVTLILDERDLPD----------RVYTPAVLVIVL 345
            .|......|        :|.||       ||..|.|:.|..|:          |::|.......|
 Worm   277 LGTIYNYFWALMLRSQDVIRYL-------YGGYLALNGRMAPEALLTFIFYHWRLHTAINAFSSL 334

  Fly   346 FAVIMGAQNLGFASPHVEAIAVATAAGQTLFNIIDRPSQVDPMDEKGNRPENTAGHIRFEGIRFR 410
            |:.:|  :.:|.:              :.:.::|:|..|:|  .:.|.......|.|.||.:.|.
 Worm   335 FSGVM--KTIGLS--------------RKVIHLINRKPQLD--YDFGTETPEIQGKIEFEVVEFA 381

  Fly   411 YPARPDVEILKGLTVDVLPGQTVAFVGASGCGKSTLIQLMQRFYDPEAGSVKLDGRDLRTLNVGW 475
            ||.|..|.::.|:.:.:..|:|||.||.||.|||||:.|:|:||.|::|.:..||..::.:|...
 Worm   382 YPTRKTVNVINGINLSIESGKTVALVGPSGNGKSTLVSLIQQFYTPQSGRILTDGIPIQNINHQH 446

  Fly   476 LRSQIGVVGQEPVLFATTIGENIRYGRPSATQADIEKAARAANCHDFITRLPKGYDTQVGEKGAQ 540
            ..|.|.:|.|||.||:.||.|||.:|..:.|:..:.|||..||.|:|::::..||||:.||||.|
 Worm   447 YHSNIALVAQEPTLFSGTIRENILFGIENGTEEAMLKAAEMANVHEFVSKMDDGYDTKCGEKGVQ 511

  Fly   541 ISGGQKQRIAIARALVRQPQVLLLDEATSALDPTSEKRVQSALELASQGPTTLVVAHRLSTITNA 605
            :||||||||||||||:|.|:||:|||||||||..||..||.||...::..|.:|:||||||:..|
 Worm   512 MSGGQKQRIAIARALIRNPRVLILDEATSALDSESEGMVQEALNKCAKERTVIVIAHRLSTVRKA 576

  Fly   606 DKIVFLKDGVVAEQGTHEELMERR-GLYCELVS 637
            .||..:::|.|.|.|.|:||||.: |||.:|||
 Worm   577 QKIAVIENGSVKEMGCHDELMENQDGLYYKLVS 609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr49NP_523724.2 MdlB 34..640 CDD:224055 208/618 (34%)
ABC_membrane 116..352 CDD:279056 66/262 (25%)
ABC_MTABC3_MDL1_MDL2 402..636 CDD:213216 118/234 (50%)
MdlB 735..1299 CDD:224055
ABC_membrane 739..998 CDD:279056
ABC_MTABC3_MDL1_MDL2 1059..1298 CDD:213216
haf-8NP_502776.1 MdlB 42..613 CDD:224055 208/618 (34%)
ABC_membrane 63..318 CDD:279056 72/294 (24%)
ABC_MTABC3_MDL1_MDL2 373..611 CDD:213216 121/237 (51%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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