DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdr49 and haf-2

DIOPT Version :9

Sequence 1:NP_523724.2 Gene:Mdr49 / 36428 FlyBaseID:FBgn0004512 Length:1302 Species:Drosophila melanogaster
Sequence 2:NP_495537.2 Gene:haf-2 / 174204 WormBaseID:WBGene00001812 Length:773 Species:Caenorhabditis elegans


Alignment Length:556 Identity:196/556 - (35%)
Similarity:302/556 - (54%) Gaps:54/556 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 QAIIDDATAFGIGSLVGSVAMFLLITLAIDLANRIALNQID--------RIRKLFLEAMLRQDIA 165
            |.|.|.....||.:|:.|:.:...:|....|...:.....|        |||.....:::|||||
 Worm   234 QVISDIVNKRGIQALIHSIIVLTCLTATSSLFGGLRGGCFDYATALVTLRIRLDLFTSLIRQDIA 298

  Fly   166 WYDTSSGSNFASKMTEDLDKLKEGIGEKIVIV----VFLI--MTFVIGIVSAFVYGWKLTLVVLS 224
            :|||:...:..|::|.|...:...:...:.:.    |.||  :.|:|      :..|:|.:|...
 Worm   299 FYDTAKTGDTMSRLTSDCQTISSTVSTNVNVFMRNGVMLIGALAFMI------LMSWRLAMVTFI 357

  Fly   225 CVPFIIAATSVVARLQGSLAEKELKSYSDAANVVEEVFSGIRTVFAFSGQEKEKERFGKLLIPAE 289
            .||.:...|...:.....::||..::.::...:.|||.|.:|||.:|:.::||.:||...|....
 Worm   358 AVPLVGFITKAYSSFYDKISEKLQQTIAETNQMAEEVVSTMRTVRSFACEKKELKRFEDRLSSTL 422

  Fly   290 NTGRKKGLYSGMGNALSWLIIYL--------C----MALAIWYGVTLILDERDLPDRVYTPAVLV 342
            :..|||.            |.||        |    :...::||..|::..:...:::.|     
 Worm   423 SVNRKKS------------IAYLFYTWNNEFCDNAILVAVLFYGGHLVMTGKMEKEQLIT----- 470

  Fly   343 IVLFAVIMGAQNLGFASPHVEAIAVATAAGQTLFNIIDRPSQVDPMDEKGNRPENTAGHIRFEGI 407
            .:|:.:.:| :||.:.|..:..:..|..|.:.:|::::|..|.: :|  |.:.....|:|.|..:
 Worm   471 FLLYQMQLG-ENLYYLSYVMSGLMEAVGASRKVFDLMNRKPQFE-LD--GMQRPFVNGNITFSHV 531

  Fly   408 RFRYPARPDVEILKGLTVDVLPGQTVAFVGASGCGKSTLIQLMQRFYDPEAGSVKLDGRDLRTLN 472
            .|.||:||:..:||.||:.:..|:|||.||.||.|||:::.|::.||:|:.|||.|||..::.:|
 Worm   532 GFTYPSRPNNPVLKDLTLSIKSGETVALVGPSGGGKSSIVSLIEHFYEPDEGSVTLDGVPIKDIN 596

  Fly   473 VGWLRSQIGVVGQEPVLFATTIGENIRYGRPSATQADIEKAARAANCHDFITRLPKGYDTQVGEK 537
            ..:...::.:|.|||||:..::..||.||...||:.|:..|::.||.|||:..|.|||||..|||
 Worm   597 HVYYHQKVALVAQEPVLYNGSVRHNILYGCDFATEDDMLNASKMANVHDFVMELEKGYDTNCGEK 661

  Fly   538 GAQISGGQKQRIAIARALVRQPQVLLLDEATSALDPTSEKRVQSALELASQGPTTLVVAHRLSTI 602
            |.|:||||||||||||||||.|.||:|||||||||..||..||.||...:|..|.::||||||||
 Worm   662 GVQMSGGQKQRIAIARALVRNPAVLILDEATSALDTESEALVQQALSRCAQERTVIIVAHRLSTI 726

  Fly   603 TNADKIVFLKDGVVAEQGTHEELM-ERRGLYCELVS 637
            ..|:||..:..|.:.:.|||.||| :..|:|..|||
 Worm   727 EKANKIAVIVKGCLVQMGTHTELMTDTDGMYYSLVS 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr49NP_523724.2 MdlB 34..640 CDD:224055 196/556 (35%)
ABC_membrane 116..352 CDD:279056 59/261 (23%)
ABC_MTABC3_MDL1_MDL2 402..636 CDD:213216 119/234 (51%)
MdlB 735..1299 CDD:224055
ABC_membrane 739..998 CDD:279056
ABC_MTABC3_MDL1_MDL2 1059..1298 CDD:213216
haf-2NP_495537.2 3a01208 15..761 CDD:273363 193/553 (35%)
ABC_membrane 215..478 CDD:279056 62/266 (23%)
ABC_MTABC3_MDL1_MDL2 526..764 CDD:213216 122/237 (51%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100059
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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