DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17019 and rnf34

DIOPT Version :9

Sequence 1:NP_001286365.1 Gene:CG17019 / 36425 FlyBaseID:FBgn0033783 Length:700 Species:Drosophila melanogaster
Sequence 2:NP_001072224.1 Gene:rnf34 / 779671 XenbaseID:XB-GENE-955597 Length:362 Species:Xenopus tropicalis


Alignment Length:724 Identity:138/724 - (19%)
Similarity:191/724 - (26%) Gaps:447/724 - (61%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 CESCGVEFTVFRRKRACFDCKRYYCANCIAS----RRCKRCSVFAQRPLSRTDLLKLKPKDLIFY 63
            |::||:.|:|||:|..|.|||:.:|:.|...    |||..|.:..:....|..|:|||.|||..|
 Frog    60 CKACGLAFSVFRKKHVCCDCKKDFCSVCSTPQENFRRCSTCHLLQETDFQRPQLMKLKVKDLRQY 124

  Fly    64 LQSKHISTEGCLEKEELVGLVLTH-----VAQVDRSRGSNASSNSPGRGQANPIDSLKQSCQNFF 123
            |..::|.|:.|.|||:||.|||.|     ..::|.|..|:|.|.|                .:||
 Frog   125 LSLRNIPTDSCREKEDLVDLVLCHHGPCPTEEMDISMDSSARSRS----------------SSFF 173

  Fly   124 SNLSDNISDSLASFDSKVTTKPPESRQPEVPTHIFEQPRVSTREIPTYASAVNGGPQHVHVQQQA 188
                                           ||.|                              
 Frog   174 -------------------------------THSF------------------------------ 177

  Fly   189 TTTNGGSQSSSSPSTSTQSSNNRDASSSSQAHVAHQEARNEEQEDAQSKSDCECSDEEIMATFSE 253
                     .||||                                                   
 Frog   178 ---------FSSPS--------------------------------------------------- 182

  Fly   254 RVSISLKTDTSGRRVNAAAEPSPVDLANVDNGPAGNTAPSPGCSKPGSSSSKADASSQSSFEELG 318
                                                 ||||..     |||:.:.|.:|.     
 Frog   183 -------------------------------------APSPSV-----SSSQGELSERSG----- 200

  Fly   319 AIGGISDESKANTDTNSSHLDQWQVLEVNRIEAVEETPTTSAADEILEVTLRSRPAVEGDDSEMG 383
                                               .|.|:....||:                  
 Frog   201 -----------------------------------STATSQGTSEII------------------ 212

  Fly   384 ESTQALNVNQRPANPSPAFYPAVPQRTKKVTRRRSDGYLNRRYHSSDDESPVAPGGPGLSLGLST 448
                                                        |:.|..|              
 Frog   213 --------------------------------------------SASDTEP-------------- 219

  Fly   449 LSEHPEHGLHPHSHRQSCQRCGKNKTNIRRHVEKMRRHLENSQMSEEDIKRELQEFLTYLEQRTK 513
                                                   :..|.:|:..||..            
 Frog   220 ---------------------------------------QELQTAEQSRKRAR------------ 233

  Fly   514 SVDASDADSHAVSPLSVDAISVAAGGRSPDMPITPTIEFSPTQDEDIRWDDDEGIHVYAAPSDFE 578
                                                                             
 Frog   234 ----------------------------------------------------------------- 233

  Fly   579 PTAGIDSRFVNLEDFEDLKDLEGLTVKQLKEVLMLHRVDYKGCCEKQELLDRVSRLWK------- 636
                     |:|.|...|:|::|||::||||:|..:.|:|.|||||.||:::||||::       
 Frog   234 ---------VSLSDLSTLEDIDGLTIRQLKEILARNFVNYSGCCEKWELVEKVSRLYRENEENRK 289

  Fly   637 ----------TMRECPAVEKLATDELCKICMDAPIECVFLECGHMATCTSCGKVLNECPICRQYI 691
                      ..:||.::.. :.|.||:|||||.|:||.||||||.|||.|||.::||||||||:
 Frog   290 SLQKSESKADPEKECRSLTG-SDDNLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYV 353

  Fly   692 VRVVRFFRA 700
            ||.|..|::
 Frog   354 VRAVHVFKS 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17019NP_001286365.1 FYVE_CARP 1..42 CDD:277289 18/42 (43%)
zf-C3HC4_3 650..694 CDD:290631 32/43 (74%)
rnf34NP_001072224.1 FYVE_like_SF 58..103 CDD:333710 18/42 (43%)
RING-HC_CARP1 314..352 CDD:319620 28/37 (76%)
RING-HC finger (C3HC4-type) 315..349 CDD:319620 24/33 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 144 1.000 Domainoid score I4578
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 222 1.000 Inparanoid score I3441
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1361306at2759
OrthoFinder 1 1.000 - - FOG0002853
OrthoInspector 1 1.000 - - otm47424
Panther 1 1.100 - - O PTHR14879
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4872
SonicParanoid 1 1.000 - - X1893
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.100

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