DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17019 and Rffl

DIOPT Version :9

Sequence 1:NP_001286365.1 Gene:CG17019 / 36425 FlyBaseID:FBgn0033783 Length:700 Species:Drosophila melanogaster
Sequence 2:XP_006247031.1 Gene:Rffl / 282844 RGDID:727916 Length:398 Species:Rattus norvegicus


Alignment Length:719 Identity:152/719 - (21%)
Similarity:202/719 - (28%) Gaps:423/719 - (58%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 CESCGVEF-TVFRRKRACFDCKRYYCANCIAS-----RRCKRCSVFAQRPLSRTDLLKLKPKDLI 61
            |::|||.| :..|:::.|.|||:.:|..|.:.     |.|..|..|......|.:|:|:|.|||.
  Rat    82 CKACGVHFASTTRKQQTCLDCKKNFCMTCSSQEGNGPRLCLLCLRFRATAFQREELMKMKVKDLR 146

  Fly    62 FYLQSKHISTEGCLEKEELVGLVLTH---VAQVDRSRGSNASSNSPGRGQANPIDSLKQSCQNFF 123
            .||....||||.|.||||||.|||..   :::.||:|       :|...||.|            
  Rat   147 DYLSLHDISTEMCREKEELVFLVLGQQPVISEADRTR-------APTLPQAFP------------ 192

  Fly   124 SNLSDNISDSLASFDSKVTTKPPESRQPEVPTHIFEQPRVSTREIPTYASAVNGGPQHVHVQQQA 188
                                                                         :|||
  Rat   193 -------------------------------------------------------------EQQA 196

  Fly   189 TTTNGGSQSSSSPSTSTQSSNNRDASSSSQAHVAHQEARNEEQEDAQSKSDCECSDEEIMATFSE 253
            ..|.  .|||:.|.||                                                 
  Rat   197 FLTQ--PQSSTVPPTS------------------------------------------------- 210

  Fly   254 RVSISLKTDTSGRRVNAAAEPSPVDLANVDNGPAGNTAPSPGCSKPGSSSSKADASSQSSFEELG 318
                                                         ||..||.|..:|        
  Rat   211 ---------------------------------------------PGLPSSPAQVTS-------- 222

  Fly   319 AIGGISDESKANTDTNSSHLDQWQVLEVNRIEAVEETPTTSAADEILEVTLRSRPAVEGDDSEMG 383
                                    ||               |.|:                    
  Rat   223 ------------------------VL---------------AQDQ-------------------- 228

  Fly   384 ESTQALNVNQRPANPSPAFYPAVPQRTKKVTRRRSDGYLNRRYHSSDDESPVAPGGPGLSLGLST 448
            |:.||:                              |::     |.|.|.|:.         |.:
  Rat   229 ETQQAI------------------------------GHV-----SQDHEEPIF---------LES 249

  Fly   449 LSEHPEHGLHPHSHRQSCQRCGKNKTNIRRHVEKMRRHLENSQMSEEDIKRELQEFLTYLEQRTK 513
            .:..|.                                                      |..|:
  Rat   250 TARVPP------------------------------------------------------EDETQ 260

  Fly   514 SVDASDADSHAVSPLSVDAISVAAGGRSPDMPITPTIEFSPTQDEDIRWDDDEGIHVYAAPSDFE 578
            |||:.|:                                                        |.
  Rat   261 SVDSEDS--------------------------------------------------------FV 269

  Fly   579 PTAGIDSRFVNLEDFEDLKDLEGLTVKQLKEVLMLHRVDYKGCCEKQELLDRVSRLWKTMRECP- 642
            |     .|..:|.|...|:|:|||||:||||:|..:.|:|||||||.||::||:||:|..:... 
  Rat   270 P-----GRRASLSDLTHLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQH 329

  Fly   643 -----------AVEKLATDELCKICMDAPIECVFLECGHMATCTSCGKVLNECPICRQYIVRVVR 696
                       ||.....:.|||||||:||:||.||||||.|||.|||.:|||||||||::|.|.
  Rat   330 LVSGNEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVH 394

  Fly   697 FFRA 700
            .||:
  Rat   395 VFRS 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17019NP_001286365.1 FYVE_CARP 1..42 CDD:277289 15/44 (34%)
zf-C3HC4_3 650..694 CDD:290631 32/43 (74%)
RfflXP_006247031.1 PHD_SF 79..128 CDD:304600 15/45 (33%)
RseA_C 193..242 CDD:281818 26/246 (11%)
zf-C3HC4_3 347..391 CDD:290631 32/43 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340471
Domainoid 1 1.000 150 1.000 Domainoid score I4282
eggNOG 1 0.900 - - E1_KOG4275
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 224 1.000 Inparanoid score I3426
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1361306at2759
OrthoFinder 1 1.000 - - FOG0002853
OrthoInspector 1 1.000 - - otm44377
orthoMCL 1 0.900 - - OOG6_109003
Panther 1 1.100 - - LDO PTHR14879
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1893
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.760

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