DRSC/TRiP Functional Genomics Resources

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Protein Alignment sug and Prdm5

DIOPT Version :9

Sequence 1:NP_610826.1 Gene:sug / 36424 FlyBaseID:FBgn0033782 Length:384 Species:Drosophila melanogaster
Sequence 2:XP_006506667.1 Gene:Prdm5 / 70779 MGIID:1918029 Length:630 Species:Mus musculus


Alignment Length:212 Identity:62/212 - (29%)
Similarity:90/212 - (42%) Gaps:68/212 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 FVCNWTDCDRVF---DTLDALAQHVTQRHAIASLTDGLYYC-----------------------R 166
            |.|:  .||..|   |||:...|.|.:||.       .|.|                       :
Mouse   432 FKCH--HCDATFKRKDTLNVHVQVVHERHK-------KYRCELCNKAFVTPSVLRSHKKTHTGEK 487

  Fly   167 WRGCQRSERGFNARYKMLVHTRTHTKEKPHRCHLCEKSFSRAENLKIHIRSHSGEKPYKCSFEGC 231
            .:.|....:.|.:...:.||.|:||.|:|::|..|||.||:.:.||:|||:|:.||||:||  .|
Mouse   488 EKVCPYCGQKFASSGTLRVHIRSHTGERPYQCPYCEKGFSKNDGLKMHIRTHTREKPYQCS--EC 550

  Fly   232 QKAYSNSSDRFKHTRTHSMEKPYMCKVAG---------------------------CQKRYTDPS 269
            .||:|......:|.|||:.|||:.|.|..                           |.|::|...
Mouse   551 SKAFSQKRGLDEHKRTHTGEKPFQCDVCDLAFSLKKMLIRHKMTHNPNRPMAECHFCHKKFTRND 615

  Fly   270 SLRKHVKTFKHSIHLIA 286
            .|:.|:    .:||.:|
Mouse   616 YLKVHM----DNIHGVA 628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sugNP_610826.1 C2H2 Zn finger 170..190 CDD:275368 5/19 (26%)
zf-H2C2_2 183..207 CDD:290200 12/23 (52%)
COG5048 192..>271 CDD:227381 36/105 (34%)
C2H2 Zn finger 198..218 CDD:275368 11/19 (58%)
zf-H2C2_2 210..237 CDD:290200 15/26 (58%)
C2H2 Zn finger 226..248 CDD:275368 8/21 (38%)
C2H2 Zn finger 256..277 CDD:275368 7/47 (15%)
Prdm5XP_006506667.1 PR-SET_PRDM5 2..128 CDD:380967
C2H2 Zn finger 169..190 CDD:275368
zf-C2H2_8 <172..222 CDD:374215
C2H2 Zn finger 201..217 CDD:275368
C2H2 Zn finger 236..256 CDD:275368
COG5048 258..621 CDD:227381 58/199 (29%)
C2H2 Zn finger 264..287 CDD:275368
C2H2 Zn finger 297..317 CDD:275368
C2H2 Zn finger 322..342 CDD:275368
C2H2 Zn finger 350..370 CDD:275368
C2H2 Zn finger 378..398 CDD:275368
C2H2 Zn finger 406..426 CDD:275368
C2H2 Zn finger 434..455 CDD:275368 8/22 (36%)
C2H2 Zn finger 463..483 CDD:275368 1/19 (5%)
C2H2 Zn finger 491..511 CDD:275368 5/19 (26%)
C2H2 Zn finger 519..539 CDD:275368 11/19 (58%)
C2H2 Zn finger 547..567 CDD:275368 8/21 (38%)
C2H2 Zn finger 575..595 CDD:275368 2/19 (11%)
C2H2 Zn finger 604..625 CDD:275368 5/24 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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