DRSC/TRiP Functional Genomics Resources

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Protein Alignment sug and zic6

DIOPT Version :9

Sequence 1:NP_610826.1 Gene:sug / 36424 FlyBaseID:FBgn0033782 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001001837.1 Gene:zic6 / 415097 ZFINID:ZDB-GENE-061207-1 Length:525 Species:Danio rerio


Alignment Length:339 Identity:115/339 - (33%)
Similarity:159/339 - (46%) Gaps:88/339 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 RPIAGYGYRQRTQSVIMK------------ARGQQDELCRSPVEFPDDSKSCSSSSECGTASDFV 129
            :|::  |.|..:|.::.:            .||..|...|           ||..:   ...:.|
Zfish   172 QPVS--GPRANSQQLVTQFLEFYKPLNMAMQRGGGDAFLR-----------CSRQN---PKHELV 220

  Fly   130 CNWTD---------CDRVFDTLDALAQHVTQRHAIASLTDGLYYCRWRGCQRSERGFNARYKMLV 185
            |.|:|         |.|.|.|:..|..|||..| :.......|.|.|..|.|..:.|.|:||::.
Zfish   221 CKWSDGQEGTGKPPCARSFGTMYELVTHVTVEH-VGGPEHSDYVCHWENCPRDRKPFKAKYKLVN 284

  Fly   186 HTRTHTKEKPHRC--HLCEKSFSRAENLKIHIRSHSGEKPYKCSFEGCQKAYSNSSDRFKHTRTH 248
            |.|.||.|||..|  |.|||.|:|:||||||.|:|:||||:||.||||.:.::|||||.||:..|
Zfish   285 HVRVHTGEKPFPCPFHGCEKVFARSENLKIHKRTHTGEKPFKCEFEGCNRRFANSSDRKKHSHVH 349

  Fly   249 SMEKPYMCKVAGCQKRYTDPSSLRKHVKTF---------KHSIHLIASQPLTLPSVPCLLEASSE 304
            |.:|||.|||.||:|.||.|||||||:|..         :...||:.::.   |.|       :|
Zfish   350 SSDKPYTCKVRGCEKCYTHPSSLRKHMKLHCKAYIAKIGEDDEHLVEARS---PEV-------TE 404

  Fly   305 SAFTCLPAASSVESTSSSSSARYYDDSNNEPSDYSLKPKQDAEFSPSYWLGDRQHSYLHSEDFFV 369
            ...|  ||:::|..|.::            ||..:|.|:...|.:    :..|.|   |:     
Zfish   405 HQDT--PASTTVTRTMTT------------PSHETLSPETRNESA----VRSRFH---HT----- 443

  Fly   370 KMDVESPLDLRIHR 383
               .|:.||...||
Zfish   444 ---FENTLDYTAHR 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sugNP_610826.1 C2H2 Zn finger 170..190 CDD:275368 8/19 (42%)
zf-H2C2_2 183..207 CDD:290200 13/25 (52%)
COG5048 192..>271 CDD:227381 50/80 (63%)
C2H2 Zn finger 198..218 CDD:275368 14/21 (67%)
zf-H2C2_2 210..237 CDD:290200 17/26 (65%)
C2H2 Zn finger 226..248 CDD:275368 12/21 (57%)
C2H2 Zn finger 256..277 CDD:275368 15/20 (75%)
zic6NP_001001837.1 C2H2 Zn finger 269..289 CDD:275368 8/19 (42%)
zf-H2C2_2 282..308 CDD:290200 13/25 (52%)
C2H2 Zn finger 297..319 CDD:275368 14/21 (67%)
zf-H2C2_2 311..338 CDD:290200 17/26 (65%)
C2H2 Zn finger 327..349 CDD:275368 12/21 (57%)
C2H2 Zn finger 357..379 CDD:275368 16/21 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X217
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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