DRSC/TRiP Functional Genomics Resources

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Protein Alignment sug and Cf2

DIOPT Version :9

Sequence 1:NP_610826.1 Gene:sug / 36424 FlyBaseID:FBgn0033782 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001350854.1 Gene:Cf2 / 33692 FlyBaseID:FBgn0000286 Length:537 Species:Drosophila melanogaster


Alignment Length:347 Identity:90/347 - (25%)
Similarity:125/347 - (36%) Gaps:106/347 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RGIYEPPLGYFTPYNTPPYIAAYSDSGSWLADHHQ-------HHQQQHQQHQQQMQ--------- 64
            :|..|......||.:..|.:|......:....|||       ||||||||.|||.|         
  Fly   194 QGFMEQQEAAVTPDDQLPAMAPRDMRLTPEEQHHQQQLQAEHHHQQQHQQQQQQQQQQQELLEQQ 258

  Fly    65 -------------------------HIRFPTPPITPP-RPIAGYGYRQRTQSVIMKARGQQDELC 103
                                     .:....||:|.. ...|..|.......||:|         
  Fly   259 QREMQEQAQQQQVHHHQQDQDLAGDQVALKVPPLTVKLNKNANGGAIVSHPQVIIK--------- 314

  Fly   104 RSPVEFPDDSKSCSS------SSECGT---ASDFVCNWTDCDRVFDTLDA-LAQHVTQRHAIASL 158
            ..|:...|.....:|      .:..|.   ||..|...|      .|:.| ||..:  ||.    
  Fly   315 EEPLSLSDSGDVVNSVPVYAIQANPGVPAPASSGVLVGT------QTVPADLAHKI--RHK---- 367

  Fly   159 TDGLYYCRWRGCQRSERGFNARYKMLVHTRTHT-------KEKPHRCHLCEKSFSRAENLKIHIR 216
                       |....:.|.....:.:|.:.||       ||:|:.|..|.|||:::..||.|.|
  Fly   368 -----------CPDCPKTFKTPGTLAMHRKIHTGEADATPKERPYTCSYCGKSFTQSNTLKQHTR 421

  Fly   217 SHSGEKPYKCSFEGCQKAYSNSSDRFKHTRTHSMEKPYMCKVAGCQKRYTDPSSLRKHVKTFKHS 281
            .|:||||:.|.:  |:|::|......||.|||:.||||.|..  |.||:|..|:|..|..    .
  Fly   422 IHTGEKPFHCGY--CEKSFSVKDYLTKHIRTHTGEKPYTCPY--CDKRFTQRSALTVHTT----K 478

  Fly   282 IHLIASQ-------PLTLPSVP 296
            :|.: .:       |:..|:.|
  Fly   479 LHPLXGRPGGGRQLPVPAPAAP 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sugNP_610826.1 C2H2 Zn finger 170..190 CDD:275368 3/19 (16%)
zf-H2C2_2 183..207 CDD:290200 11/30 (37%)
COG5048 192..>271 CDD:227381 36/78 (46%)
C2H2 Zn finger 198..218 CDD:275368 9/19 (47%)
zf-H2C2_2 210..237 CDD:290200 12/26 (46%)
C2H2 Zn finger 226..248 CDD:275368 7/21 (33%)
C2H2 Zn finger 256..277 CDD:275368 8/20 (40%)
Cf2NP_001350854.1 COG5048 <366..>473 CDD:227381 42/125 (34%)
C2H2 Zn finger 368..388 CDD:275368 3/19 (16%)
C2H2 Zn finger 403..423 CDD:275368 9/19 (47%)
C2H2 Zn finger 431..451 CDD:275368 7/21 (33%)
zf-H2C2_2 443..468 CDD:316026 13/26 (50%)
C2H2 Zn finger 459..480 CDD:275368 8/26 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 54 1.000 Inparanoid score I1809
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.960

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